Analysis of interatomic Contacts of Structural Units in PDB entry:
4M5X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M5X entry

There are 2 chains in PDB entry 4M5X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 209LYS 554
B
LYS 208LYS 554
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 4M5X. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
224 234Right-handed alpha
Helix 2
2
A
235 245Right-handed alpha
Helix 3
3
A
255 270Right-handed alpha
Helix 4
4
A
276 284Right-handed alpha
Helix 5
5
A
295 312Right-handed alpha
Helix 6
6
A
318 325Right-handed alpha
Helix 7
7
A
359 368Right-handed alpha
Helix 8
8
A
374 378Right-handed 310
Helix 9
9
A
382 384Right-handed 310
Helix 10
10
A
434 437Right-handed 310
Helix 11
11
A
489 494Right-handed alpha
Helix 12
12
A
495 498Right-handed 310
Helix 13
13
A
523 528Right-handed alpha
Helix 14
14
A
532 536Right-handed 310
Helix 15
15
A
537 552Right-handed alpha
Helix 16
16
B
224 234Right-handed alpha
Helix 17
17
B
235 245Right-handed alpha
Helix 18
18
B
255 270Right-handed alpha
Helix 19
19
B
276 284Right-handed alpha
Helix 20
20
B
295 312Right-handed alpha
Helix 21
21
B
318 325Right-handed alpha
Helix 22
22
B
359 368Right-handed alpha
Helix 23
23
B
374 378Right-handed 310
Helix 24
24
B
382 384Right-handed 310
Helix 25
25
B
434 437Right-handed 310
Helix 26
26
B
489 494Right-handed alpha
Helix 27
27
B
495 498Right-handed 310
Helix 28
28
B
523 528Right-handed alpha
Helix 29
29
B
532 536Right-handed 310
Helix 30
30
B
537 553Right-handed alpha
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There are 10 sheets in PDB entry 4M5X. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
340 347first strand
Strand 2
A
326 334anti-parallel
Strand 3
A
389 397anti-parallel
Strand 4
A
371 373anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
350 352first strand
Strand 2
A
401 406parallel
Strand 3
A
511 520anti-parallel
Strand 4
A
447 457anti-parallel
Strand 5
A
430 432anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
350 352first strand
Strand 2
A
401 406parallel
Strand 3
A
511 520anti-parallel
Strand 4
A
447 457anti-parallel
Strand 5
A
464 469anti-parallel
Strand 6
A
477 481anti-parallel
Strand 7
A
484 488anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
379 380first strand
Strand 2
A
386 387anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
409 410first strand
Strand 2
A
419 420anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
340 347first strand
Strand 2
B
326 334anti-parallel
Strand 3
B
389 397anti-parallel
Strand 4
B
371 373anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
350 352first strand
Strand 2
B
401 406parallel
Strand 3
B
511 520anti-parallel
Strand 4
B
447 457anti-parallel
Strand 5
B
430 432anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
350 352first strand
Strand 2
B
401 406parallel
Strand 3
B
511 520anti-parallel
Strand 4
B
447 457anti-parallel
Strand 5
B
464 469anti-parallel
Strand 6
B
478 481anti-parallel
Strand 7
B
484 487anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
379 380first strand
Strand 2
B
386 387anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
409 411first strand
Strand 2
B
418 420anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il