Analysis of interatomic Contacts of Structural Units in PDB entry:
4M75


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M75 entry

There are 14 chains in PDB entry 4M75 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 32TYR 172
B
MSE 1MSE 91
C
PRO 4PRO 79
D
GLU 14LYS 85
E
ILE 6GLY 84
F
ARG 16ALA 105
G
ASN -6GLN 91
H
TYR 38MSE 171
I
MSE 1ARG 88
J
THR 3PRO 79
K
SER 10GLN 84
L
ILE 6GLY 85
M
ASP 29SER 104
N
GLU -7GLN 92
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 4M75. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
41 48Right-handed alpha
Helix 2
2
A
131 159Right-handed alpha
Helix 3
3
B
2 9Right-handed alpha
Helix 4
4
B
73 77Right-handed 310
Helix 5
5
B
78 89Right-handed alpha
Helix 6
6
C
5 11Right-handed alpha
Helix 7
7
D
15 20Right-handed alpha
Helix 8
8
E
7 16Right-handed alpha
Helix 9
9
F
26 34Right-handed alpha
Helix 10
10
G
2 10Right-handed alpha
Helix 11
11
G
84 91Right-handed alpha
Helix 12
12
H
41 47Right-handed alpha
Helix 13
13
H
116 125Right-handed alpha
Helix 14
14
H
131 160Right-handed alpha
Helix 15
15
I
2 9Right-handed alpha
Helix 16
16
I
52 55Right-handed 310
Helix 17
17
I
64 67Right-handed 310
Helix 18
18
I
73 77Right-handed 310
Helix 19
19
I
78 88Right-handed alpha
Helix 20
20
J
4 11Right-handed alpha
Helix 21
21
K
11 19Right-handed alpha
Helix 22
22
K
75 78Right-handed 310
Helix 23
23
L
7 14Right-handed alpha
Helix 24
24
M
29 34Right-handed 310
Helix 25
25
N
2 10Right-handed alpha
Helix 26
26
N
87 92Right-handed alpha
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There are 11 sheets in PDB entry 4M75. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 36 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
76 81first strand
Strand 2
A
97 104anti-parallel
Strand 3
A
77 84anti-parallel
Strand 4
A
63 71anti-parallel
Strand 5
A
53 58anti-parallel
Strand 6
A
109 114anti-parallel
Strand 7
B
60 62anti-parallel
Strand 8
B
38 40anti-parallel
Strand 9
B
24 32anti-parallel
Strand 10
B
14 19anti-parallel
Strand 11
B
67 72anti-parallel
Strand 12
C
59 68anti-parallel
Strand 13
C
39 48anti-parallel
Strand 14
C
24 33anti-parallel
Strand 15
C
15 20anti-parallel
Strand 16
C
73 77anti-parallel
Strand 17
D
71 73anti-parallel
Strand 18
D
47 55anti-parallel
Strand 19
D
33 41anti-parallel
Strand 20
D
23 28anti-parallel
Strand 21
D
78 83anti-parallel
Strand 22
E
70 73anti-parallel
Strand 23
E
43 52anti-parallel
Strand 24
E
28 37anti-parallel
Strand 25
E
19 24anti-parallel
Strand 26
E
78 83anti-parallel
Strand 27
F
93 94anti-parallel
Strand 28
F
61 70anti-parallel
Strand 29
F
46 55anti-parallel
Strand 30
F
37 42anti-parallel
Strand 31
F
99 104anti-parallel
Strand 32
G
68 71anti-parallel
Strand 33
G
38 45anti-parallel
Strand 34
G
24 32anti-parallel
Strand 35
G
14 19anti-parallel
Strand 36
G
76 81anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
44 45first strand
Strand 2
B
24 32anti-parallel
Strand 3
B
38 40anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
33 41first strand
Strand 2
D
47 55anti-parallel
Strand 3
D
65 66anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
28 37first strand
Strand 2
E
43 52anti-parallel
Strand 3
E
62 66anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
46 55first strand
Strand 2
F
61 70anti-parallel
Strand 3
F
88 89anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
87 88first strand
Strand 2
A
93 94anti-parallel
Strand 3
A
128 129parallel
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There are 35 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
38 45first strand
Strand 2
I
24 32anti-parallel
Strand 3
I
14 18anti-parallel
Strand 4
I
57 62first strand
Strand 5
H
109 115anti-parallel
Strand 6
H
53 58anti-parallel
Strand 7
H
63 71anti-parallel
Strand 8
H
77 85anti-parallel
Strand 9
H
96 104anti-parallel
Strand 10
N
76 81anti-parallel
Strand 11
N
14 19anti-parallel
Strand 12
N
24 32anti-parallel
Strand 13
N
38 40anti-parallel
Strand 14
N
69 71anti-parallel
Strand 15
M
99 103anti-parallel
Strand 16
M
37 42anti-parallel
Strand 17
M
47 55anti-parallel
Strand 18
M
61 69anti-parallel
Strand 19
M
92 94anti-parallel
Strand 20
L
78 83anti-parallel
Strand 21
L
19 24anti-parallel
Strand 22
L
29 37anti-parallel
Strand 23
L
43 52anti-parallel
Strand 24
L
62 73anti-parallel
Strand 25
K
80 83anti-parallel
Strand 26
K
23 27anti-parallel
Strand 27
K
33 41anti-parallel
Strand 28
K
47 55anti-parallel
Strand 29
K
70 73anti-parallel
Strand 30
J
73 77anti-parallel
Strand 31
J
15 20anti-parallel
Strand 32
J
24 32anti-parallel
Strand 33
J
39 50anti-parallel
Strand 34
J
61 68anti-parallel
Strand 35
I
69 71anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
24 32first strand
Strand 2
J
39 50anti-parallel
Strand 3
J
57 58anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
33 41first strand
Strand 2
K
47 55anti-parallel
Strand 3
K
65 66anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
47 55first strand
Strand 2
M
61 69anti-parallel
Strand 3
M
88 89anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
93 94first strand
Strand 2
H
128 129parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il