Analysis of interatomic Contacts of Structural Units in PDB entry:
4M7F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M7F entry

There are 2 chains in PDB entry 4M7F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 239ARG 458
B
 SER 239VAL 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4M7F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
243 250Right-handed alpha
Helix 2
2
A
276 280Right-handed 310
Helix 3
3
A
298 305Right-handed alpha
Helix 4
4
A
316 325Right-handed alpha
Helix 5
5
A
379 383Right-handed 310
Helix 6
6
A
400 405Right-handed alpha
Helix 7
7
A
438 442Right-handed alpha
Helix 8
8
B
243 250Right-handed alpha
Helix 9
9
B
276 280Right-handed 310
Helix 10
10
B
298 305Right-handed alpha
Helix 11
11
B
316 325Right-handed alpha
Helix 12
12
B
379 383Right-handed 310
Helix 13
13
B
400 405Right-handed alpha
Helix 14
14
B
438 442Right-handed alpha
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There are 8 sheets in PDB entry 4M7F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 260first strand
Strand 2
A
269 274anti-parallel
Strand 3
A
282 288anti-parallel
Strand 4
A
313 314anti-parallel
Strand 5
A
306 307anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 260first strand
Strand 2
A
269 274anti-parallel
Strand 3
A
282 288anti-parallel
Strand 4
A
449 456anti-parallel
Strand 5
A
329 336anti-parallel
Strand 6
A
342 352anti-parallel
Strand 7
A
366 373anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 418first strand
Strand 2
A
436 437anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
426 427first strand
Strand 2
A
445 446anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 260first strand
Strand 2
B
269 274anti-parallel
Strand 3
B
282 288anti-parallel
Strand 4
B
313 314anti-parallel
Strand 5
B
306 307anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 260first strand
Strand 2
B
269 274anti-parallel
Strand 3
B
282 288anti-parallel
Strand 4
B
449 456anti-parallel
Strand 5
B
329 336anti-parallel
Strand 6
B
342 352anti-parallel
Strand 7
B
366 373anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
417 418first strand
Strand 2
B
436 437anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
426 427first strand
Strand 2
B
445 446anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il