Analysis of interatomic Contacts of Structural Units in PDB entry:
4M8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M8J entry

There is 1 chain in PDB entry 4M8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 9LYS 503
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 4M8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 32Right-handed alpha
Helix 2
2
A
35 72Right-handed alpha
Helix 3
3
A
87 98Right-handed alpha
Helix 4
4
A
101 118Right-handed alpha
Helix 5
5
A
127 142Right-handed alpha
Helix 6
6
A
143 149Right-handed alpha
Helix 7
7
A
150 163Right-handed alpha
Helix 8
8
A
170 174Right-handed 310
Helix 9
9
A
175 185Right-handed alpha
Helix 10
10
A
187 223Right-handed alpha
Helix 11
11
A
228 249Right-handed alpha
Helix 12
12
A
251 277Right-handed alpha
Helix 13
13
A
278 302Right-handed alpha
Helix 14
14
A
311 316Right-handed alpha
Helix 15
15
A
316 339Right-handed alpha
Helix 16
16
A
343 376Right-handed alpha
Helix 17
17
A
380 389Right-handed alpha
Helix 18
18
A
389 400Right-handed alpha
Helix 19
19
A
403 435Right-handed alpha
Helix 20
20
A
445 467Right-handed alpha
Helix 21
21
A
469 502Right-handed alpha
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There are no sheets in PDB entry 4M8J
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il