Analysis of interatomic Contacts of Structural Units in PDB entry:
4MJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MJI entry

There are 9 chains in PDB entry 4MJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1PRO 276
B
 ILE 1MET 99
C
 THR 1ILE 8
D
 ASP 7PHE 198
E
 ALA 5ARG 244
F
 GLY 1GLU 275
G
 ILE 1MET 99
H
 THR 1ILE 8
I
 GLY 4VAL 44
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 4MJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 53Right-handed 310
Helix 2
2
A
56 85Right-handed alpha
Helix 3
3
A
137 150Right-handed alpha
Helix 4
4
A
151 161Right-handed alpha
Helix 5
5
A
162 175Right-handed alpha
Helix 6
6
A
175 180Right-handed alpha
Helix 7
7
D
80 84Right-handed 310
Helix 8
8
D
164 167Right-handed 310
Helix 9
9
D
183 188Right-handed alpha
Helix 10
10
E
86 90Right-handed 310
Helix 11
11
E
133 140Right-handed alpha
Helix 12
12
E
200 205Right-handed alpha
Helix 13
13
F
49 53Right-handed 310
Helix 14
14
F
56 85Right-handed alpha
Helix 15
15
F
137 150Right-handed alpha
Helix 16
16
F
151 161Right-handed alpha
Helix 17
17
F
162 175Right-handed alpha
Helix 18
18
F
175 180Right-handed alpha
Helix 19
19
I
80 84Right-handed 310
Helix 20
20
I
164 167Right-handed 310
Helix 21
21
I
183 188Right-handed alpha
Helix 22
22
J
86 90Right-handed 310
Helix 23
23
J
133 140Right-handed alpha
Helix 24
24
J
200 205Right-handed alpha
Back to top of page

There are 32 sheets in PDB entry 4MJI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
18 28anti-parallel
Strand 4
A
3 14anti-parallel
Strand 5
A
94 103anti-parallel
Strand 6
A
109 118anti-parallel
Strand 7
A
121 126anti-parallel
Strand 8
A
133 135anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 193first strand
Strand 2
A
198 208anti-parallel
Strand 3
A
241 250anti-parallel
Strand 4
A
228 230anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 193first strand
Strand 2
A
198 208anti-parallel
Strand 3
A
241 250anti-parallel
Strand 4
A
234 235anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 219first strand
Strand 2
A
257 262anti-parallel
Strand 3
A
270 272anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
55 56anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 41first strand
Strand 2
B
78 83anti-parallel
Strand 3
B
91 94anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 14first strand
Strand 2
D
105 110parallel
Strand 3
D
85 92anti-parallel
Strand 4
D
32 38anti-parallel
Strand 5
D
48 50anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 14first strand
Strand 2
D
105 110parallel
Strand 3
D
85 92anti-parallel
Strand 4
D
99 101anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
20 24first strand
Strand 2
D
71 76anti-parallel
Strand 3
D
61 66anti-parallel
Strand 4
D
55 58anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
154 155first strand
Strand 2
D
168 177anti-parallel
Strand 3
D
132 137anti-parallel
Strand 4
D
119 125anti-parallel
Strand 5
E
126 131anti-parallel
Strand 6
E
142 152anti-parallel
Strand 7
E
190 199anti-parallel
Strand 8
E
172 174anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
160 163first strand
Strand 2
D
168 177anti-parallel
Strand 3
D
132 137anti-parallel
Strand 4
D
119 125anti-parallel
Strand 5
E
126 131anti-parallel
Strand 6
E
142 152anti-parallel
Strand 7
E
190 199anti-parallel
Strand 8
E
179 180anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
8 10first strand
Strand 2
E
22 27anti-parallel
Strand 3
E
78 82anti-parallel
Strand 4
E
68 71anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
13 17first strand
Strand 2
E
111 116parallel
Strand 3
E
91 97anti-parallel
Strand 4
E
34 40anti-parallel
Strand 5
E
47 53anti-parallel
Strand 6
E
56 59anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
13 17first strand
Strand 2
E
111 116parallel
Strand 3
E
91 97anti-parallel
Strand 4
E
106 107anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
166 167first strand
Strand 2
E
157 163anti-parallel
Strand 3
E
209 216anti-parallel
Strand 4
E
236 242anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
46 47first strand
Strand 2
F
31 37anti-parallel
Strand 3
F
18 28anti-parallel
Strand 4
F
3 14anti-parallel
Strand 5
F
94 103anti-parallel
Strand 6
F
109 118anti-parallel
Strand 7
F
121 126anti-parallel
Strand 8
F
133 135anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
186 193first strand
Strand 2
F
198 208anti-parallel
Strand 3
F
241 250anti-parallel
Strand 4
F
228 230anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
186 193first strand
Strand 2
F
198 208anti-parallel
Strand 3
F
241 250anti-parallel
Strand 4
F
234 235anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
214 219first strand
Strand 2
F
257 262anti-parallel
Strand 3
F
270 272anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
9 11first strand
Strand 2
G
21 30anti-parallel
Strand 3
G
62 70anti-parallel
Strand 4
G
55 56anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
36 41first strand
Strand 2
G
78 83anti-parallel
Strand 3
G
91 94anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
11 14first strand
Strand 2
I
107 110parallel
Back to list of sheets
Back to top of page

There are 4 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
19 24first strand
Strand 2
I
71 76anti-parallel
Strand 3
I
61 66anti-parallel
Strand 4
I
55 58anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
48 50first strand
Strand 2
I
30 38anti-parallel
Strand 3
I
86 93anti-parallel
Strand 4
I
99 101anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
119 121first strand
Strand 2
I
133 137anti-parallel
Strand 3
I
168 176anti-parallel
Strand 4
I
154 155anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
119 121first strand
Strand 2
I
133 137anti-parallel
Strand 3
I
168 176anti-parallel
Strand 4
I
160 163anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
8 10first strand
Strand 2
J
22 27anti-parallel
Strand 3
J
78 82anti-parallel
Strand 4
J
68 69anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
13 17first strand
Strand 2
J
112 116parallel
Strand 3
J
91 98anti-parallel
Strand 4
J
34 40anti-parallel
Strand 5
J
47 53anti-parallel
Strand 6
J
56 59anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
13 17first strand
Strand 2
J
112 116parallel
Strand 3
J
91 98anti-parallel
Strand 4
J
106 107anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
126 130first strand
Strand 2
J
142 152anti-parallel
Strand 3
J
190 199anti-parallel
Strand 4
J
173 174anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
126 130first strand
Strand 2
J
142 152anti-parallel
Strand 3
J
190 199anti-parallel
Strand 4
J
179 180anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
166 167first strand
Strand 2
J
157 163anti-parallel
Strand 3
J
210 216anti-parallel
Strand 4
J
236 241anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il