Analysis of interatomic Contacts of Structural Units in PDB entry:
4NAW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NAW entry

There are 6 chains in PDB entry 4NAW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 53GLY 140
B
THR 2THR 274
C
MET 10LEU 43
D
GLU 153LEU 165
E
LYS 53GLY 140
F
ASP 3PRO 116
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 4NAW. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
80 92Right-handed alpha
Helix 2
2
A
115 124Right-handed alpha
Helix 3
3
B
3 13Right-handed alpha
Helix 4
4
B
44 49Right-handed alpha
Helix 5
5
B
49 58Right-handed alpha
Helix 6
6
B
59 60Right-handed 310
Helix 7
7
B
61 65Right-handed 310
Helix 8
8
B
82 91Right-handed alpha
Helix 9
9
B
117 138Right-handed alpha
Helix 10
10
B
139 145Right-handed alpha
Helix 11
11
B
146 159Right-handed alpha
Helix 12
12
B
161 173Right-handed alpha
Helix 13
13
B
214 223Right-handed alpha
Helix 14
14
B
250 258Right-handed alpha
Helix 15
15
C
11 29Right-handed alpha
Helix 16
16
C
29 43Right-handed alpha
Helix 17
17
D
157 164Right-handed alpha
Helix 18
18
E
80 92Right-handed alpha
Helix 19
19
E
115 124Right-handed alpha
Helix 20
20
F
4 13Right-handed alpha
Helix 21
21
F
44 49Right-handed alpha
Helix 22
22
F
49 58Right-handed alpha
Helix 23
23
F
59 60Right-handed 310
Helix 24
24
F
61 65Right-handed 310
Helix 25
25
F
82 91Right-handed alpha
Helix 26
26
F
117 138Right-handed alpha
Helix 27
27
F
139 144Right-handed alpha
Helix 28
28
F
146 159Right-handed alpha
Helix 29
29
F
161 173Right-handed alpha
Helix 30
30
F
214 223Right-handed alpha
Helix 31
31
F
250 258Right-handed alpha
Helix 32
32
G
11 29Right-handed alpha
Helix 33
33
G
32 43Right-handed alpha
Helix 34
34
H
157 162Right-handed alpha
Helix 35
35
I
80 92Right-handed alpha
Helix 36
36
I
115 124Right-handed alpha
Helix 37
37
J
5 13Right-handed alpha
Helix 38
38
J
44 49Right-handed alpha
Helix 39
39
J
49 58Right-handed alpha
Helix 40
40
J
82 91Right-handed alpha
Helix 41
41
J
117 138Right-handed alpha
Helix 42
42
J
139 145Right-handed alpha
Helix 43
43
J
146 159Right-handed alpha
Helix 44
44
J
161 173Right-handed alpha
Helix 45
45
J
214 223Right-handed alpha
Helix 46
46
J
224 227Right-handed 310
Helix 47
47
J
250 258Right-handed alpha
Helix 48
48
K
11 29Right-handed alpha
Helix 49
49
K
29 41Right-handed alpha
Helix 50
50
L
157 162Right-handed alpha
Helix 51
51
M
80 92Right-handed alpha
Helix 52
52
M
115 124Right-handed alpha
Helix 53
53
N
4 13Right-handed alpha
Helix 54
54
N
44 49Right-handed alpha
Helix 55
55
N
49 58Right-handed alpha
Helix 56
56
N
59 60Right-handed 310
Helix 57
57
N
61 65Right-handed 310
Helix 58
58
N
82 91Right-handed alpha
Helix 59
59
N
117 138Right-handed alpha
Helix 60
60
N
139 144Right-handed alpha
Helix 61
61
N
146 159Right-handed alpha
Helix 62
62
N
161 173Right-handed alpha
Helix 63
63
N
214 223Right-handed alpha
Helix 64
64
N
224 227Right-handed 310
Helix 65
65
N
250 258Right-handed alpha
Helix 66
66
O
11 29Right-handed alpha
Helix 67
67
O
32 43Right-handed alpha
Helix 68
68
P
157 162Right-handed alpha
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There are 12 sheets in PDB entry 4NAW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
101 104first strand
Strand 2
A
128 134anti-parallel
Strand 3
A
55 61parallel
Strand 4
A
72 75anti-parallel
Strand 5
D
155 156parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
35 40first strand
Strand 2
B
15 22anti-parallel
Strand 3
B
98 103parallel
Strand 4
B
69 72anti-parallel
Strand 5
B
75 76anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
187 190first strand
Strand 2
B
265 271parallel
Strand 3
B
236 239anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
101 104first strand
Strand 2
E
128 134anti-parallel
Strand 3
E
55 61parallel
Strand 4
E
72 75anti-parallel
Strand 5
H
155 156parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
35 40first strand
Strand 2
F
15 22anti-parallel
Strand 3
F
98 103parallel
Strand 4
F
69 72anti-parallel
Strand 5
F
75 76anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
187 190first strand
Strand 2
F
265 271parallel
Strand 3
F
236 239anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
101 104first strand
Strand 2
I
128 134anti-parallel
Strand 3
I
55 61parallel
Strand 4
I
72 75anti-parallel
Strand 5
L
155 156parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
35 40first strand
Strand 2
J
15 22anti-parallel
Strand 3
J
98 103parallel
Strand 4
J
69 72anti-parallel
Strand 5
J
75 76anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
187 190first strand
Strand 2
J
265 271parallel
Strand 3
J
236 239anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
101 104first strand
Strand 2
M
128 134anti-parallel
Strand 3
M
55 61parallel
Strand 4
M
72 75anti-parallel
Strand 5
P
155 156parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
35 40first strand
Strand 2
N
15 22anti-parallel
Strand 3
N
98 103parallel
Strand 4
N
69 72anti-parallel
Strand 5
N
75 76anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
187 191first strand
Strand 2
N
265 271parallel
Strand 3
N
236 239anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il