Analysis of interatomic Contacts of Structural Units in PDB entry:
4NEF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NEF entry

There are 4 chains in PDB entry 4NEF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 240
B
 SER 6LYS 238
C
 SER 6GLU 241
D
 SER 2ARG 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 4NEF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 33Right-handed alpha
Helix 2
2
A
40 64Right-handed alpha
Helix 3
3
A
68 78Right-handed alpha
Helix 4
4
A
82 108Right-handed alpha
Helix 5
5
A
109 114Right-handed alpha
Helix 6
6
A
126 149Right-handed alpha
Helix 7
7
A
158 180Right-handed alpha
Helix 8
8
A
184 196Right-handed alpha
Helix 9
9
A
202 222Right-handed alpha
Helix 10
10
A
231 238Right-handed alpha
Helix 11
11
B
7 32Right-handed alpha
Helix 12
12
B
40 64Right-handed alpha
Helix 13
13
B
68 78Right-handed alpha
Helix 14
14
B
82 108Right-handed alpha
Helix 15
15
B
109 114Right-handed alpha
Helix 16
16
B
126 150Right-handed alpha
Helix 17
17
B
151 154Right-handed 310
Helix 18
18
B
159 180Right-handed alpha
Helix 19
19
B
184 195Right-handed alpha
Helix 20
20
B
202 222Right-handed alpha
Helix 21
21
B
231 238Right-handed alpha
Helix 22
22
C
7 32Right-handed alpha
Helix 23
23
C
40 64Right-handed alpha
Helix 24
24
C
68 76Right-handed alpha
Helix 25
25
C
82 108Right-handed alpha
Helix 26
26
C
109 114Right-handed alpha
Helix 27
27
C
126 149Right-handed alpha
Helix 28
28
C
150 154Right-handed 310
Helix 29
29
C
160 180Right-handed alpha
Helix 30
30
C
184 196Right-handed alpha
Helix 31
31
C
202 222Right-handed alpha
Helix 32
32
C
229 239Right-handed alpha
Helix 33
33
D
3 32Right-handed alpha
Helix 34
34
D
40 64Right-handed alpha
Helix 35
35
D
68 78Right-handed alpha
Helix 36
36
D
82 106Right-handed alpha
Helix 37
37
D
109 114Right-handed alpha
Helix 38
38
D
126 149Right-handed alpha
Helix 39
39
D
150 154Right-handed 310
Helix 40
40
D
159 180Right-handed alpha
Helix 41
41
D
184 195Right-handed alpha
Helix 42
42
D
202 222Right-handed alpha
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There are no sheets in PDB entry 4NEF
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il