Analysis of interatomic Contacts of Structural Units in PDB entry:
4NEH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4NEH entry

There are 2 chains in PDB entry 4NEH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1	GLY 1084
B	GLN 1	GLU 198

There are 40 helices in PDB entry 4NEH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	145	161	Right-handed alpha
Helix 2	2	A	183	189	Right-handed alpha
Helix 3	3	A	192	196	Right-handed 310
Helix 4	4	A	208	220	Right-handed alpha
Helix 5	5	A	222	226	Right-handed 310
Helix 6	6	A	249	260	Right-handed alpha
Helix 7	7	A	270	273	Right-handed 310
Helix 8	8	A	275	286	Right-handed alpha
Helix 9	9	A	289	292	Right-handed 310
Helix 10	10	A	301	307	Right-handed alpha
Helix 11	11	A	316	320	Right-handed 310
Helix 12	12	A	352	357	Right-handed alpha
Helix 13	13	A	378	382	Right-handed 310
Helix 14	14	A	407	411	Right-handed 310
Helix 15	15	A	526	531	Right-handed alpha
Helix 16	16	A	555	559	Right-handed alpha
Helix 17	17	A	990	998	Right-handed alpha
Helix 18	18	A	1035	1040	Right-handed 310
Helix 19	19	A	1066	1069	Right-handed 310
Helix 20	20	B	11	18	Right-handed alpha
Helix 21	21	B	36	38	Right-handed 310
Helix 22	22	B	46	50	Right-handed 310
Helix 23	23	B	114	118	Right-handed 310
Helix 24	24	B	123	139	Right-handed alpha
Helix 25	25	B	161	167	Right-handed alpha
Helix 26	26	B	191	201	Right-handed alpha
Helix 27	27	B	213	224	Right-handed alpha
Helix 28	28	B	224	229	Right-handed alpha
Helix 29	29	B	249	255	Right-handed 310
Helix 30	30	B	271	276	Right-handed 310
Helix 31	31	B	281	292	Right-handed alpha
Helix 32	32	B	304	310	Right-handed alpha
Helix 33	33	B	310	315	Right-handed alpha
Helix 34	34	B	329	343	Right-handed alpha
Helix 35	35	B	482	486	Right-handed 310
Helix 36	36	B	528	532	Right-handed alpha
Helix 37	37	B	599	602	Right-handed 310
Helix 38	38	B	603	613	Right-handed alpha
Helix 39	39	B	614	618	Right-handed 310
Helix 40	40	B	620	625	Right-handed alpha

There are 29 sheets in PDB entry 4NEH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	590	595	anti-parallel
Strand 3	A	582	587	anti-parallel
Strand 4	A	569	573	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	25	first strand
Strand 2	A	29	40	anti-parallel
Strand 3	A	43	50	anti-parallel
Strand 4	A	57	59	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	80	first strand
Strand 2	A	85	97	anti-parallel
Strand 3	A	100	110	anti-parallel
Strand 4	A	117	119	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	182	first strand
Strand 2	A	167	174	anti-parallel
Strand 3	A	131	138	parallel
Strand 4	A	232	239	parallel
Strand 5	A	262	268	parallel
Strand 6	A	294	296	parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	342	first strand
Strand 2	A	345	350	anti-parallel
Strand 3	A	360	362	anti-parallel
Strand 4	A	370	372	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	394	first strand
Strand 2	A	399	405	anti-parallel
Strand 3	A	413	420	anti-parallel
Strand 4	A	423	431	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	443	446	first strand
Strand 2	A	456	465	anti-parallel
Strand 3	A	470	477	anti-parallel
Strand 4	A	489	491	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	506	510	first strand
Strand 2	A	519	524	anti-parallel
Strand 3	A	533	537	anti-parallel
Strand 4	A	551	554	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	539	540	first strand
Strand 2	A	544	545	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	672	673	first strand
Strand 2	A	690	700	anti-parallel
Strand 3	A	629	641	anti-parallel
Strand 4	A	599	609	anti-parallel
Strand 5	A	733	734	parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	680	687	first strand
Strand 2	A	654	662	anti-parallel
Strand 3	A	711	721	anti-parallel
Strand 4	A	741	746	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	763	767	first strand
Strand 2	A	781	789	anti-parallel
Strand 3	A	856	865	anti-parallel
Strand 4	A	808	810	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	774	776	first strand
Strand 2	A	895	905	parallel
Strand 3	A	874	882	anti-parallel
Strand 4	A	795	805	anti-parallel
Strand 5	A	839	851	anti-parallel
Strand 6	A	828	834	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	774	776	first strand
Strand 2	A	895	905	parallel
Strand 3	A	1060	1062	parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	907	911	first strand
Strand 2	A	929	940	anti-parallel
Strand 3	A	1023	1033	anti-parallel
Strand 4	A	964	970	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	918	922	first strand
Strand 2	A	1071	1081	parallel
Strand 3	A	1044	1054	anti-parallel
Strand 4	A	946	958	anti-parallel
Strand 5	A	1007	1018	anti-parallel
Strand 6	A	980	984	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	961	962	first strand
Strand 2	A	946	958	anti-parallel
Strand 3	A	1044	1054	anti-parallel
Strand 4	A	1000	1001	parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	41	first strand
Strand 2	B	22	24	anti-parallel
Strand 3	B	56	57	anti-parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	65	first strand
Strand 2	B	80	85	anti-parallel
Strand 3	B	414	421	parallel
Strand 4	B	402	408	anti-parallel
Strand 5	B	345	349	anti-parallel
Strand 6	B	376	378	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	77	first strand
Strand 2	B	91	97	anti-parallel
Strand 3	B	387	395	anti-parallel
Strand 4	B	356	363	anti-parallel
Strand 5	B	369	373	anti-parallel

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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	189	first strand
Strand 2	B	142	149	anti-parallel
Strand 3	B	105	112	parallel
Strand 4	B	234	241	parallel
Strand 5	B	294	301	parallel
Strand 6	B	319	323	parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	444	first strand
Strand 2	B	447	449	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	455	first strand
Strand 2	B	461	462	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	491	first strand
Strand 2	B	494	497	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	521	522	first strand
Strand 2	B	525	526	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	533	536	first strand
Strand 2	B	539	542	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	546	547	first strand
Strand 2	B	553	554	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	572	575	first strand
Strand 2	B	578	581	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	628	631	first strand
Strand 2	B	662	667	parallel
Strand 3	B	649	657	anti-parallel
Strand 4	B	638	643	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4NEH

Analysis of interatomic Contacts of Structural Units in PDB entry:
4NEH