Analysis of interatomic Contacts of Structural Units in PDB entry:
4NGS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NGS entry

There is 1 chain in PDB entry 4NGS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 55ALA 750
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 4NGS. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
57 65Right-handed alpha
Helix 2
2
A
66 78Right-handed alpha
Helix 3
3
A
86 104Right-handed alpha
Helix 4
4
A
181 191Right-handed alpha
Helix 5
5
A
209 220Right-handed alpha
Helix 6
6
A
230 235Right-handed alpha
Helix 7
7
A
282 286Right-handed 310
Helix 8
8
A
298 307Right-handed alpha
Helix 9
9
A
316 320Right-handed 310
Helix 10
10
A
334 338Right-handed 310
Helix 11
11
A
388 408Right-handed alpha
Helix 12
12
A
423 427Right-handed 310
Helix 13
13
A
428 438Right-handed alpha
Helix 14
14
A
438 445Right-handed alpha
Helix 15
15
A
470 479Right-handed alpha
Helix 16
16
A
492 501Right-handed alpha
Helix 17
17
A
521 526Right-handed alpha
Helix 18
18
A
558 566Right-handed alpha
Helix 19
19
A
570 590Right-handed alpha
Helix 20
20
A
596 616Right-handed alpha
Helix 21
21
A
618 626Right-handed alpha
Helix 22
22
A
629 653Right-handed alpha
Helix 23
23
A
657 674Right-handed alpha
Helix 24
24
A
705 713Right-handed alpha
Helix 25
25
A
714 718Right-handed 310
Helix 26
26
A
720 745Right-handed alpha
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There are 5 sheets in PDB entry 4NGS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
107 119first strand
Strand 2
A
349 362anti-parallel
Strand 3
A
414 421anti-parallel
Strand 4
A
367 377parallel
Strand 5
A
446 451parallel
Strand 6
A
531 538parallel
Strand 7
A
461 466anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
137 140first strand
Strand 2
A
127 131anti-parallel
Strand 3
A
341 345anti-parallel
Strand 4
A
171 172anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
162 163first strand
Strand 2
A
256 257parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
174 176first strand
Strand 2
A
200 204parallel
Strand 3
A
224 228parallel
Strand 4
A
294 297parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
692 695first strand
Strand 2
A
698 704anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il