Analysis of interatomic Contacts of Structural Units in PDB entry:
4NSW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NSW entry

There are 2 chains in PDB entry 4NSW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO -3SER 364
B
 SER 0SER 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 4NSW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 13Right-handed alpha
Helix 2
2
A
14 69Right-handed alpha
Helix 3
3
A
73 114Right-handed alpha
Helix 4
4
A
117 144Right-handed alpha
Helix 5
5
A
148 213Right-handed alpha
Helix 6
6
A
213 249Right-handed alpha
Helix 7
7
A
311 313Right-handed 310
Helix 8
8
A
344 362Right-handed alpha
Helix 9
9
B
6 13Right-handed alpha
Helix 10
10
B
14 68Right-handed alpha
Helix 11
11
B
73 108Right-handed alpha
Helix 12
12
B
108 114Right-handed alpha
Helix 13
13
B
117 144Right-handed alpha
Helix 14
14
B
150 213Right-handed alpha
Helix 15
15
B
213 249Right-handed alpha
Helix 16
16
B
311 315Right-handed 310
Helix 17
17
B
344 359Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4NSW. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 260first strand
Strand 2
A
267 275anti-parallel
Strand 3
A
283 291anti-parallel
Strand 4
A
294 298anti-parallel
Strand 5
A
306 309anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 260first strand
Strand 2
A
267 275anti-parallel
Strand 3
A
337 341anti-parallel
Strand 4
A
328 333anti-parallel
Strand 5
A
315 319anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 262first strand
Strand 2
B
265 275anti-parallel
Strand 3
B
283 291anti-parallel
Strand 4
B
294 298anti-parallel
Strand 5
B
306 309anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 262first strand
Strand 2
B
265 275anti-parallel
Strand 3
B
337 341anti-parallel
Strand 4
B
328 332anti-parallel
Strand 5
B
316 319anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il