Analysis of interatomic Contacts of Structural Units in PDB entry:
4NTY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NTY entry

There are 3 chains in PDB entry 4NTY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 46PHE 453
B
 ILE 2GLY 60
C
 ASN 1CYS 118
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 4NTY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 70Right-handed alpha
Helix 2
2
A
100 104Right-handed 310
Helix 3
3
A
105 113Right-handed alpha
Helix 4
4
A
132 143Right-handed alpha
Helix 5
5
A
154 163Right-handed alpha
Helix 6
6
A
165 169Right-handed alpha
Helix 7
7
A
181 183Right-handed 310
Helix 8
8
A
214 217Right-handed 310
Helix 9
9
A
226 230Right-handed 310
Helix 10
10
A
258 263Right-handed alpha
Helix 11
11
A
305 323Right-handed alpha
Helix 12
12
A
337 344Right-handed alpha
Helix 13
13
A
344 355Right-handed alpha
Helix 14
14
A
385 394Right-handed alpha
Helix 15
15
A
396 403Right-handed alpha
Helix 16
16
A
427 439Right-handed alpha
Helix 17
17
A
445 453Right-handed alpha
Helix 18
18
B
5 9Right-handed 310
Helix 19
19
B
50 58Right-handed alpha
Helix 20
20
C
2 13Right-handed alpha
Helix 21
21
C
17 22Right-handed alpha
Helix 22
22
C
38 56Right-handed alpha
Helix 23
23
C
73 77Right-handed 310
Helix 24
24
C
84 104Right-handed alpha
Helix 25
25
C
107 111Right-handed 310
Helix 26
26
C
114 118Right-handed 310
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There are 6 sheets in PDB entry 4NTY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 81first strand
Strand 2
A
416 423anti-parallel
Strand 3
A
270 282parallel
Strand 4
A
404 411parallel
Strand 5
A
219 224anti-parallel
Strand 6
A
170 175anti-parallel
Strand 7
A
178 179anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 81first strand
Strand 2
A
416 423anti-parallel
Strand 3
A
270 282parallel
Strand 4
A
367 379anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
209 210anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 190first strand
Strand 2
A
193 198anti-parallel
Strand 3
A
90 95anti-parallel
Strand 4
A
246 251anti-parallel
Strand 5
A
264 266anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 292first strand
Strand 2
A
364 365parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 27first strand
Strand 2
B
32 38anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il