Analysis of interatomic Contacts of Structural Units in PDB entry:
4NWM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NWM entry

There are 4 chains in PDB entry 4NWM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 395GLY 480
A
 LEU 482GLU 657
B
 MET 395GLY 480
B
 LEU 482GLU 657
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 4NWM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
398 400Right-handed 310
Helix 2
2
A
438 444Right-handed alpha
Helix 3
3
A
445 451Right-handed alpha
Helix 4
4
A
481 488Right-handed alpha
Helix 5
5
A
494 515Right-handed alpha
Helix 6
6
A
523 525Right-handed 310
Helix 7
7
A
541 546Right-handed 310
Helix 8
8
A
548 553Right-handed alpha
Helix 9
9
A
560 564Right-handed 310
Helix 10
10
A
565 572Right-handed alpha
Helix 11
11
A
575 592Right-handed alpha
Helix 12
12
A
602 613Right-handed alpha
Helix 13
13
A
623 633Right-handed alpha
Helix 14
14
A
637 641Right-handed 310
Helix 15
15
A
643 657Right-handed alpha
Helix 16
16
B
398 400Right-handed 310
Helix 17
17
B
438 445Right-handed alpha
Helix 18
18
B
446 451Right-handed alpha
Helix 19
19
B
481 488Right-handed alpha
Helix 20
20
B
494 515Right-handed alpha
Helix 21
21
B
523 525Right-handed 310
Helix 22
22
B
541 546Right-handed 310
Helix 23
23
B
548 553Right-handed alpha
Helix 24
24
B
560 564Right-handed 310
Helix 25
25
B
565 572Right-handed alpha
Helix 26
26
B
575 592Right-handed alpha
Helix 27
27
B
602 613Right-handed alpha
Helix 28
28
B
623 633Right-handed alpha
Helix 29
29
B
637 641Right-handed 310
Helix 30
30
B
643 657Right-handed alpha
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There are 4 sheets in PDB entry 4NWM. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 411first strand
Strand 2
A
414 421anti-parallel
Strand 3
A
425 431anti-parallel
Strand 4
A
471 475anti-parallel
Strand 5
A
460 464anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
527 529first strand
Strand 2
A
535 537anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
402 411first strand
Strand 2
B
414 421anti-parallel
Strand 3
B
425 431anti-parallel
Strand 4
B
471 475anti-parallel
Strand 5
B
460 464anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
527 529first strand
Strand 2
B
535 537anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il