Analysis of interatomic Contacts of Structural Units in PDB entry:
4NY0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4NY0 entry

There are 4 chains in PDB entry 4NY0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	GLU 34	PRO 362
A	GLU 34	PRO 362
B	GLU 34	PRO 362
C	GLU 34	ASP 405

There are 68 helices in PDB entry 4NY0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	D	48	51	Right-handed 310
Helix 2	2	D	63	74	Right-handed alpha
Helix 3	3	D	79	81	Right-handed 310
Helix 4	4	D	103	115	Right-handed alpha
Helix 5	5	D	116	118	Right-handed 310
Helix 6	6	D	132	138	Right-handed alpha
Helix 7	7	D	140	159	Right-handed alpha
Helix 8	8	D	164	180	Right-handed alpha
Helix 9	9	D	184	188	Right-handed 310
Helix 10	10	D	190	195	Right-handed alpha
Helix 11	11	D	208	215	Right-handed alpha
Helix 12	12	D	219	229	Right-handed alpha
Helix 13	13	D	230	232	Right-handed 310
Helix 14	14	D	235	248	Right-handed alpha
Helix 15	15	D	249	251	Right-handed 310
Helix 16	16	D	295	297	Right-handed 310
Helix 17	17	D	333	352	Right-handed alpha
Helix 18	18	A	48	51	Right-handed 310
Helix 19	19	A	63	74	Right-handed alpha
Helix 20	20	A	79	81	Right-handed 310
Helix 21	21	A	103	115	Right-handed alpha
Helix 22	22	A	116	118	Right-handed 310
Helix 23	23	A	132	138	Right-handed alpha
Helix 24	24	A	140	159	Right-handed alpha
Helix 25	25	A	164	180	Right-handed alpha
Helix 26	26	A	186	189	Right-handed 310
Helix 27	27	A	190	199	Right-handed alpha
Helix 28	28	A	202	206	Right-handed 310
Helix 29	29	A	208	215	Right-handed alpha
Helix 30	30	A	219	229	Right-handed alpha
Helix 31	31	A	235	248	Right-handed alpha
Helix 32	32	A	249	251	Right-handed 310
Helix 33	33	A	295	297	Right-handed 310
Helix 34	34	A	333	352	Right-handed alpha
Helix 35	35	B	48	51	Right-handed 310
Helix 36	36	B	63	74	Right-handed alpha
Helix 37	37	B	79	81	Right-handed 310
Helix 38	38	B	103	115	Right-handed alpha
Helix 39	39	B	116	118	Right-handed 310
Helix 40	40	B	132	139	Right-handed alpha
Helix 41	41	B	140	159	Right-handed alpha
Helix 42	42	B	164	180	Right-handed alpha
Helix 43	43	B	190	195	Right-handed alpha
Helix 44	44	B	208	215	Right-handed alpha
Helix 45	45	B	219	229	Right-handed alpha
Helix 46	46	B	230	232	Right-handed 310
Helix 47	47	B	235	248	Right-handed alpha
Helix 48	48	B	249	251	Right-handed 310
Helix 49	49	B	295	297	Right-handed 310
Helix 50	50	B	333	352	Right-handed alpha
Helix 51	51	C	48	51	Right-handed 310
Helix 52	52	C	63	75	Right-handed alpha
Helix 53	53	C	79	81	Right-handed 310
Helix 54	54	C	103	115	Right-handed alpha
Helix 55	55	C	116	118	Right-handed 310
Helix 56	56	C	132	138	Right-handed alpha
Helix 57	57	C	140	159	Right-handed alpha
Helix 58	58	C	164	180	Right-handed alpha
Helix 59	59	C	186	189	Right-handed 310
Helix 60	60	C	190	195	Right-handed alpha
Helix 61	61	C	196	198	Right-handed 310
Helix 62	62	C	208	215	Right-handed alpha
Helix 63	63	C	219	229	Right-handed alpha
Helix 64	64	C	230	232	Right-handed 310
Helix 65	65	C	235	248	Right-handed alpha
Helix 66	66	C	249	251	Right-handed 310
Helix 67	67	C	295	297	Right-handed 310
Helix 68	68	C	333	352	Right-handed alpha

There are 8 sheets in PDB entry 4NY0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	58	first strand
Strand 2	D	35	40	anti-parallel
Strand 3	D	120	126	parallel
Strand 4	D	83	89	anti-parallel
Strand 5	D	95	98	anti-parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	290	294	first strand
Strand 2	D	279	283	anti-parallel
Strand 3	D	268	275	anti-parallel
Strand 4	D	256	262	anti-parallel
Strand 5	D	327	331	anti-parallel
Strand 6	D	314	320	anti-parallel
Strand 7	D	299	306	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	58	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	A	120	126	parallel
Strand 4	A	83	89	anti-parallel
Strand 5	A	95	98	anti-parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	294	first strand
Strand 2	A	279	283	anti-parallel
Strand 3	A	268	275	anti-parallel
Strand 4	A	256	262	anti-parallel
Strand 5	A	327	331	anti-parallel
Strand 6	A	314	320	anti-parallel
Strand 7	A	299	306	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	58	first strand
Strand 2	B	35	40	anti-parallel
Strand 3	B	120	126	parallel
Strand 4	B	83	89	anti-parallel
Strand 5	B	95	98	anti-parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	294	first strand
Strand 2	B	279	283	anti-parallel
Strand 3	B	268	275	anti-parallel
Strand 4	B	256	262	anti-parallel
Strand 5	B	327	331	anti-parallel
Strand 6	B	314	320	anti-parallel
Strand 7	B	299	306	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	58	first strand
Strand 2	C	35	40	anti-parallel
Strand 3	C	120	126	parallel
Strand 4	C	83	89	anti-parallel
Strand 5	C	95	98	anti-parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	290	294	first strand
Strand 2	C	279	283	anti-parallel
Strand 3	C	268	275	anti-parallel
Strand 4	C	256	262	anti-parallel
Strand 5	C	327	331	anti-parallel
Strand 6	C	314	320	anti-parallel
Strand 7	C	299	306	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4NY0

Analysis of interatomic Contacts of Structural Units in PDB entry:
4NY0