Analysis of interatomic Contacts of Structural Units in PDB entry:
4NZP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NZP entry

There is 1 chain in PDB entry 4NZP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4PHE 406
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 4NZP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 29Right-handed alpha
Helix 2
2
A
46 56Right-handed alpha
Helix 3
3
A
59 61Right-handed 310
Helix 4
4
A
68 76Right-handed alpha
Helix 5
5
A
76 82Right-handed alpha
Helix 6
6
A
93 114Right-handed alpha
Helix 7
7
A
127 140Right-handed alpha
Helix 8
8
A
147 152Right-handed alpha
Helix 9
9
A
157 167Right-handed alpha
Helix 10
10
A
193 198Right-handed 310
Helix 11
11
A
204 208Right-handed 310
Helix 12
12
A
242 257Right-handed alpha
Helix 13
13
A
280 298Right-handed alpha
Helix 14
14
A
299 320Right-handed alpha
Helix 15
15
A
324 337Right-handed alpha
Helix 16
16
A
381 402Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 4NZP. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 67first strand
Strand 2
A
32 39parallel
Strand 3
A
7 11parallel
Strand 4
A
117 119parallel
Strand 5
A
144 146parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 184first strand
Strand 2
A
189 192anti-parallel
Strand 3
A
273 279anti-parallel
Strand 4
A
261 267anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 240first strand
Strand 2
A
232 236anti-parallel
Strand 3
A
222 229anti-parallel
Strand 4
A
343 350anti-parallel
Strand 5
A
353 360anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il