Analysis of interatomic Contacts of Structural Units in PDB entry:
4O0Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4O0Z entry

There are 2 chains in PDB entry 4O0Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 8GLU 487
B
GLU 8LEU 486
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 4O0Z. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
10 14Right-handed 310
Helix 2
2
A
16 25Right-handed 310
Helix 3
3
A
61 70Right-handed alpha
Helix 4
4
A
76 92Right-handed alpha
Helix 5
5
A
97 109Right-handed alpha
Helix 6
6
A
138 142Right-handed 310
Helix 7
7
A
143 148Right-handed alpha
Helix 8
8
A
148 154Right-handed alpha
Helix 9
9
A
155 181Right-handed alpha
Helix 10
10
A
185 188Right-handed 310
Helix 11
11
A
200 212Right-handed alpha
Helix 12
12
A
221 231Right-handed alpha
Helix 13
13
A
246 252Right-handed alpha
Helix 14
14
A
253 256Right-handed 310
Helix 15
15
A
257 269Right-handed alpha
Helix 16
16
A
282 289Right-handed alpha
Helix 17
17
A
295 300Right-handed alpha
Helix 18
18
A
316 332Right-handed alpha
Helix 19
19
A
357 371Right-handed alpha
Helix 20
20
A
374 376Right-handed 310
Helix 21
21
A
383 388Right-handed alpha
Helix 22
22
A
420 424Right-handed 310
Helix 23
23
A
446 451Right-handed 310
Helix 24
24
A
472 480Right-handed alpha
Helix 25
25
A
482 487Right-handed alpha
Helix 26
26
B
10 14Right-handed 310
Helix 27
27
B
16 25Right-handed 310
Helix 28
28
B
61 70Right-handed alpha
Helix 29
29
B
76 92Right-handed alpha
Helix 30
30
B
97 109Right-handed alpha
Helix 31
31
B
138 142Right-handed 310
Helix 32
32
B
143 148Right-handed alpha
Helix 33
33
B
148 154Right-handed alpha
Helix 34
34
B
155 181Right-handed alpha
Helix 35
35
B
185 188Right-handed 310
Helix 36
36
B
200 212Right-handed alpha
Helix 37
37
B
221 231Right-handed alpha
Helix 38
38
B
246 252Right-handed alpha
Helix 39
39
B
257 269Right-handed alpha
Helix 40
40
B
282 289Right-handed alpha
Helix 41
41
B
295 299Right-handed 310
Helix 42
42
B
316 332Right-handed alpha
Helix 43
43
B
357 371Right-handed alpha
Helix 44
44
B
374 376Right-handed 310
Helix 45
45
B
383 388Right-handed alpha
Helix 46
46
B
420 424Right-handed 310
Helix 47
47
B
446 451Right-handed 310
Helix 48
48
B
472 480Right-handed alpha
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There are 10 sheets in PDB entry 4O0Z. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
409 412first strand
Strand 2
A
397 406anti-parallel
Strand 3
A
30 39anti-parallel
Strand 4
A
130 136anti-parallel
Strand 5
A
114 118anti-parallel
Strand 6
A
459 463anti-parallel
Strand 7
A
466 467anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
56 58first strand
Strand 2
A
124 126anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
190 192first strand
Strand 2
A
378 382parallel
Strand 3
A
348 352parallel
Strand 4
A
308 311parallel
Strand 5
A
274 277parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
335 336first strand
Strand 2
A
342 343anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
431 434first strand
Strand 2
A
440 443anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
409 412first strand
Strand 2
B
397 406anti-parallel
Strand 3
B
30 39anti-parallel
Strand 4
B
130 136anti-parallel
Strand 5
B
114 118anti-parallel
Strand 6
B
459 463anti-parallel
Strand 7
B
466 467anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
56 58first strand
Strand 2
B
124 126anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
190 192first strand
Strand 2
B
378 382parallel
Strand 3
B
348 352parallel
Strand 4
B
308 311parallel
Strand 5
B
274 277parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
335 336first strand
Strand 2
B
342 343anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
431 434first strand
Strand 2
B
440 443anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il