Analysis of interatomic Contacts of Structural Units in PDB entry:
4O8N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4O8N entry

There is 1 chain in PDB entry 4O8N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 27ARG 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 5 helices in PDB entry 4O8N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
86 93Right-handed 310
Helix 2
2
A
111 114Right-handed 310
Helix 3
3
A
190 192Right-handed 310
Helix 4
4
A
295 298Right-handed 310
Helix 5
5
A
313 317Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 4O8N. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 37first strand
Strand 2
A
320 326anti-parallel
Strand 3
A
300 305anti-parallel
Strand 4
A
279 283anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 59first strand
Strand 2
A
62 71anti-parallel
Strand 3
A
76 81anti-parallel
Strand 4
A
95 97anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 110first strand
Strand 2
A
115 121anti-parallel
Strand 3
A
127 132anti-parallel
Strand 4
A
145 148anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 166first strand
Strand 2
A
170 176anti-parallel
Strand 3
A
181 188anti-parallel
Strand 4
A
201 205anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 257first strand
Strand 2
A
239 246anti-parallel
Strand 3
A
226 233anti-parallel
Strand 4
A
213 220anti-parallel
Strand 5
A
293 294parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il