Analysis of interatomic Contacts of Structural Units in PDB entry:
4OFY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4OFY entry

There are 6 chains in PDB entry 4OFY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 21	TYR 268
B	LEU 21	TYR 268
C	LEU 21	TYR 268
D	PHE 20	ALA 429
E	PHE 20	ALA 429
F	PHE 20	ALA 429

There are 12 helices in PDB entry 4OFY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	95	99	Right-handed 310
Helix 2	2	A	182	187	Right-handed alpha
Helix 3	3	A	236	240	Right-handed 310
Helix 4	4	B	95	99	Right-handed 310
Helix 5	5	B	182	187	Right-handed alpha
Helix 6	6	B	236	240	Right-handed 310
Helix 7	7	C	95	99	Right-handed 310
Helix 8	8	C	182	187	Right-handed alpha
Helix 9	9	C	236	240	Right-handed 310
Helix 10	10	D	199	203	Right-handed 310
Helix 11	11	E	199	203	Right-handed 310
Helix 12	12	F	199	203	Right-handed 310

There are 49 sheets in PDB entry 4OFY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	27	first strand
Strand 2	A	45	47	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	35	first strand
Strand 2	A	120	125	parallel
Strand 3	A	101	103	anti-parallel
Strand 4	A	56	57	anti-parallel
Strand 5	A	60	61	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	42	first strand
Strand 2	A	88	91	anti-parallel
Strand 3	A	76	79	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	106	first strand
Strand 2	A	115	116	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	133	first strand
Strand 2	A	148	157	anti-parallel
Strand 3	A	224	233	anti-parallel
Strand 4	A	203	212	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	143	first strand
Strand 2	A	258	267	parallel
Strand 3	A	243	249	anti-parallel
Strand 4	A	162	168	anti-parallel
Strand 5	A	176	180	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	27	first strand
Strand 2	B	45	47	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	35	first strand
Strand 2	B	120	125	parallel
Strand 3	B	101	103	anti-parallel
Strand 4	B	56	57	anti-parallel
Strand 5	B	60	61	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	42	first strand
Strand 2	B	88	91	anti-parallel
Strand 3	B	76	79	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	106	first strand
Strand 2	B	115	116	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	143	first strand
Strand 2	B	258	267	parallel
Strand 3	B	243	249	anti-parallel
Strand 4	B	162	168	anti-parallel
Strand 5	B	176	180	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	157	first strand
Strand 2	B	225	233	anti-parallel
Strand 3	B	206	211	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	27	first strand
Strand 2	C	45	47	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	35	first strand
Strand 2	C	120	125	parallel
Strand 3	C	101	103	anti-parallel
Strand 4	C	56	57	anti-parallel
Strand 5	C	60	61	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	42	first strand
Strand 2	C	88	91	anti-parallel
Strand 3	C	76	79	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	106	first strand
Strand 2	C	115	116	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	143	first strand
Strand 2	C	258	267	parallel
Strand 3	C	243	249	anti-parallel
Strand 4	C	162	168	anti-parallel
Strand 5	C	176	180	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	157	first strand
Strand 2	C	225	233	anti-parallel
Strand 3	C	203	211	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	30	first strand
Strand 2	D	117	122	parallel
Strand 3	D	100	108	anti-parallel
Strand 4	D	52	55	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	30	first strand
Strand 2	D	117	122	parallel
Strand 3	D	100	108	anti-parallel
Strand 4	D	112	114	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	38	first strand
Strand 2	D	88	91	anti-parallel
Strand 3	D	77	80	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	132	first strand
Strand 2	D	148	157	anti-parallel
Strand 3	D	188	196	anti-parallel
Strand 4	D	176	177	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	132	first strand
Strand 2	D	148	157	anti-parallel
Strand 3	D	188	196	anti-parallel
Strand 4	D	180	182	anti-parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	143	first strand
Strand 2	D	218	229	parallel
Strand 3	D	206	213	anti-parallel
Strand 4	D	162	167	anti-parallel
Strand 5	D	170	171	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	239	first strand
Strand 2	D	251	259	anti-parallel
Strand 3	D	288	296	anti-parallel
Strand 4	D	280	283	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	246	247	first strand
Strand 2	D	327	328	parallel

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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	270	first strand
Strand 2	D	305	311	anti-parallel
Strand 3	D	320	324	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	334	337	first strand
Strand 2	D	348	354	anti-parallel
Strand 3	D	385	394	anti-parallel
Strand 4	D	378	382	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	341	343	first strand
Strand 2	D	417	428	parallel
Strand 3	D	405	414	anti-parallel
Strand 4	D	362	367	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	28	31	first strand
Strand 2	E	112	123	parallel
Strand 3	E	100	108	anti-parallel
Strand 4	E	52	55	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	38	first strand
Strand 2	E	88	91	anti-parallel
Strand 3	E	77	80	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	132	first strand
Strand 2	E	147	157	anti-parallel
Strand 3	E	188	197	anti-parallel
Strand 4	E	176	177	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	132	first strand
Strand 2	E	147	157	anti-parallel
Strand 3	E	188	197	anti-parallel
Strand 4	E	180	182	anti-parallel

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There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	138	143	first strand
Strand 2	E	218	229	parallel
Strand 3	E	206	213	anti-parallel
Strand 4	E	162	167	anti-parallel
Strand 5	E	170	171	anti-parallel

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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	236	239	first strand
Strand 2	E	251	258	anti-parallel
Strand 3	E	288	296	anti-parallel
Strand 4	E	280	283	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	246	247	first strand
Strand 2	E	327	328	parallel

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There are 3 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	266	271	first strand
Strand 2	E	305	311	anti-parallel
Strand 3	E	320	324	anti-parallel

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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	334	337	first strand
Strand 2	E	348	354	anti-parallel
Strand 3	E	385	394	anti-parallel
Strand 4	E	378	382	anti-parallel

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There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	341	343	first strand
Strand 2	E	417	428	parallel
Strand 3	E	405	414	anti-parallel
Strand 4	E	362	367	anti-parallel

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There are 3 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	38	first strand
Strand 2	F	88	91	anti-parallel
Strand 3	F	77	80	anti-parallel

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There are 3 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	55	first strand
Strand 2	F	100	108	anti-parallel
Strand 3	F	112	120	anti-parallel

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There are 4 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	130	132	first strand
Strand 2	F	148	157	anti-parallel
Strand 3	F	188	196	anti-parallel
Strand 4	F	176	177	anti-parallel

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There are 4 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	130	132	first strand
Strand 2	F	148	157	anti-parallel
Strand 3	F	188	196	anti-parallel
Strand 4	F	180	182	anti-parallel

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There are 5 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	139	143	first strand
Strand 2	F	218	229	parallel
Strand 3	F	206	213	anti-parallel
Strand 4	F	162	167	anti-parallel
Strand 5	F	170	171	anti-parallel

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There are 4 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	236	239	first strand
Strand 2	F	251	258	anti-parallel
Strand 3	F	288	296	anti-parallel
Strand 4	F	280	283	anti-parallel

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There are 2 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	246	247	first strand
Strand 2	F	327	328	parallel

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There are 3 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	266	271	first strand
Strand 2	F	305	311	anti-parallel
Strand 3	F	320	324	anti-parallel

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There are 4 strands in AV sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	334	337	first strand
Strand 2	F	348	354	anti-parallel
Strand 3	F	385	394	anti-parallel
Strand 4	F	378	382	anti-parallel

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There are 4 strands in AW sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	341	343	first strand
Strand 2	F	417	428	parallel
Strand 3	F	405	414	anti-parallel
Strand 4	F	362	367	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4OFY

Analysis of interatomic Contacts of Structural Units in PDB entry:
4OFY