Analysis of interatomic Contacts of Structural Units in PDB entry:
4OKJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OKJ entry

There are 2 chains in PDB entry 4OKJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1ASP 160
B
 VAL 1SER 158
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4OKJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 43Right-handed 310
Helix 2
2
A
44 51Right-handed alpha
Helix 3
3
A
52 55Right-handed 310
Helix 4
4
A
65 77Right-handed alpha
Helix 5
5
A
92 101Right-handed alpha
Helix 6
6
A
102 104Right-handed 310
Helix 7
7
A
105 109Right-handed 310
Helix 8
8
A
120 127Right-handed alpha
Helix 9
9
A
141 158Right-handed alpha
Helix 10
10
B
39 43Right-handed 310
Helix 11
11
B
44 51Right-handed alpha
Helix 12
12
B
52 55Right-handed 310
Helix 13
13
B
65 77Right-handed alpha
Helix 14
14
B
92 101Right-handed alpha
Helix 15
15
B
105 109Right-handed 310
Helix 16
16
B
120 127Right-handed alpha
Helix 17
17
B
141 157Right-handed alpha
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There are 2 sheets in PDB entry 4OKJ. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
30 35parallel
Strand 3
A
16 25anti-parallel
Strand 4
A
2 11anti-parallel
Strand 5
A
86 89parallel
Strand 6
A
118 119parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 64first strand
Strand 2
B
30 35parallel
Strand 3
B
16 25anti-parallel
Strand 4
B
2 11anti-parallel
Strand 5
B
86 89parallel
Strand 6
B
118 119parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il