Analysis of interatomic Contacts of Structural Units in PDB entry:
4OO3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OO3 entry

There is 1 chain in PDB entry 4OO3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 27THR 465
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4OO3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 51Right-handed alpha
Helix 2
2
A
70 86Right-handed alpha
Helix 3
3
A
102 111Right-handed alpha
Helix 4
4
A
121 135Right-handed alpha
Helix 5
5
A
148 165Right-handed alpha
Helix 6
6
A
173 177Right-handed 310
Helix 7
7
A
178 189Right-handed alpha
Helix 8
8
A
190 195Right-handed alpha
Helix 9
9
A
227 231Right-handed 310
Helix 10
10
A
232 237Right-handed alpha
Helix 11
11
A
238 242Right-handed 310
Helix 12
12
A
243 256Right-handed alpha
Helix 13
13
A
262 266Right-handed alpha
Helix 14
14
A
280 289Right-handed alpha
Helix 15
15
A
294 301Right-handed 310
Helix 16
16
A
357 361Right-handed 310
Helix 17
17
A
375 394Right-handed alpha
Helix 18
18
A
412 416Right-handed 310
Helix 19
19
A
418 437Right-handed alpha
Helix 20
20
A
442 464Right-handed alpha
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There are 2 sheets in PDB entry 4OO3. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 99first strand
Strand 2
A
62 67parallel
Strand 3
A
38 41parallel
Strand 4
A
115 118parallel
Strand 5
A
138 141parallel
Strand 6
A
169 171parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 279first strand
Strand 2
A
306 318anti-parallel
Strand 3
A
321 330anti-parallel
Strand 4
A
207 214parallel
Strand 5
A
340 346anti-parallel
Strand 6
A
350 356anti-parallel
Strand 7
A
365 370anti-parallel
Strand 8
A
406 410anti-parallel
Strand 9
A
398 403anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il