Analysis of interatomic Contacts of Structural Units in PDB entry:
4P11


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4P11 entry

There is 1 chain in PDB entry 4P11 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 32PRO 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 4P11. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 43Right-handed alpha
Helix 2
AA2
A
65 79Right-handed alpha
Helix 3
AA3
A
89 98Right-handed alpha
Helix 4
AA4
A
144 149Right-handed 310
Helix 5
AA5
A
159 172Right-handed alpha
Helix 6
AA6
A
184 194Right-handed alpha
Helix 7
AA7
A
204 211Right-handed alpha
Helix 8
AA8
A
239 255Right-handed alpha
Helix 9
AA9
A
256 267Right-handed alpha
Helix 10
AB1
A
267 273Right-handed alpha
Helix 11
AB2
A
273 287Right-handed alpha
Helix 12
AB3
A
287 302Right-handed alpha
Helix 13
AB4
A
305 318Right-handed alpha
Helix 14
AB5
A
336 344Right-handed alpha
Helix 15
AB6
A
350 369Right-handed alpha
Helix 16
AB7
A
376 389Right-handed alpha
Helix 17
AB8
A
389 403Right-handed alpha
Helix 18
AB9
A
409 417Right-handed alpha
Helix 19
AC1
A
418 421Right-handed 310
Helix 20
AC2
A
422 427Right-handed alpha
Helix 21
AC3
A
435 455Right-handed alpha
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There are 6 sheets in PDB entry 4P11. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 87first strand
Strand 2
A
44 50parallel
Strand 3
A
105 106parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
62 64anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 122first strand
Strand 2
A
232 234anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 129first strand
Strand 2
A
227 229anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 203first strand
Strand 2
A
131 136anti-parallel
Strand 3
A
217 222anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 156first strand
Strand 2
A
178 180parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il