Analysis of interatomic Contacts of Structural Units in PDB entry:
4P6W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4P6W entry

There are 2 chains in PDB entry 4P6W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 526LYS 777
B
ALA 741ASP 752
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4P6W. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
531 540Right-handed alpha
Helix 2
AA2
A
555 580Right-handed alpha
Helix 3
AA3
A
583 587Right-handed 310
Helix 4
AA4
A
588 616Right-handed alpha
Helix 5
AA5
A
632 636Right-handed 310
Helix 6
AA6
A
639 656Right-handed alpha
Helix 7
AA7
A
659 672Right-handed alpha
Helix 8
AA8
A
682 704Right-handed alpha
Helix 9
AA9
A
707 709Right-handed 310
Helix 10
AB1
A
710 742Right-handed alpha
Helix 11
AB2
A
750 767Right-handed alpha
Helix 12
AB3
B
742 750Right-handed alpha
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There are 2 sheets in PDB entry 4P6W. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
621 624first strand
Strand 2
A
627 629anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
674 675first strand
Strand 2
A
770 771anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il