Analysis of interatomic Contacts of Structural Units in PDB entry:
4P8S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4P8S entry

There is 1 chain in PDB entry 4P8S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 29CYS 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 4P8S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
243 249Right-handed alpha
Helix 2
AA2
A
266 268Right-handed 310
Helix 3
AA3
A
269 279Right-handed alpha
Helix 4
AA4
A
291 295Right-handed 310
Helix 5
AA5
A
298 302Right-handed 310
Helix 6
AA6
A
303 308Right-handed 310
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There are 4 sheets in PDB entry 4P8S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 38first strand
Strand 2
A
43 45anti-parallel
Strand 3
A
64 66parallel
Strand 4
A
86 88parallel
Strand 5
A
110 112parallel
Strand 6
A
135 137parallel
Strand 7
A
159 161parallel
Strand 8
A
183 185parallel
Strand 9
A
207 209parallel
Strand 10
A
231 233parallel
Strand 11
A
255 257parallel
Strand 12
A
282 283parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 75first strand
Strand 2
A
96 97parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
217 218parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 264first strand
Strand 2
A
288 290parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il