Analysis of interatomic Contacts of Structural Units in PDB entry:
4P8W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4P8W entry

There is 1 chain in PDB entry 4P8W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 27LEU 390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 4P8W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 40Right-handed 310
Helix 2
AA2
A
47 51Right-handed 310
Helix 3
AA3
A
77 92Right-handed alpha
Helix 4
AA4
A
108 112Right-handed 310
Helix 5
AA5
A
113 116Right-handed 310
Helix 6
AA6
A
117 135Right-handed alpha
Helix 7
AA7
A
147 173Right-handed alpha
Helix 8
AA8
A
187 195Right-handed alpha
Helix 9
AA9
A
196 204Right-handed alpha
Helix 10
AB1
A
237 243Right-handed 310
Helix 11
AB2
A
244 255Right-handed alpha
Helix 12
AB3
A
258 260Right-handed 310
Helix 13
AB4
A
304 311Right-handed alpha
Helix 14
AB5
A
338 352Right-handed alpha
Helix 15
AB6
A
361 365Right-handed 310
Helix 16
AB7
A
377 389Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 4P8W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
58 67anti-parallel
Strand 3
A
96 103parallel
Strand 4
A
139 144parallel
Strand 5
A
179 185parallel
Strand 6
A
206 210parallel
Strand 7
A
262 267parallel
Strand 8
A
356 360parallel
Strand 9
A
28 34parallel
Strand 10
A
58 67parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 289first strand
Strand 2
A
269 275anti-parallel
Strand 3
A
301 303anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 289first strand
Strand 2
A
269 275anti-parallel
Strand 3
A
332 335anti-parallel
Strand 4
A
324 329anti-parallel
Strand 5
A
315 319anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il