Analysis of interatomic Contacts of Structural Units in PDB entry:
4PE5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4PE5 entry

There are 4 chains in PDB entry 4PE5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	LEU 830
B	LYS 30	LEU 841
C	LYS 25	ILE 833
D	PRO 32	SER 838

There are108 helices in PDB entry 4PE5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	52	Right-handed alpha
Helix 2	AA2	A	70	82	Right-handed alpha
Helix 3	AA3	A	83	85	Right-handed 310
Helix 4	AA4	A	104	114	Right-handed alpha
Helix 5	AA5	A	125	130	Right-handed 310
Helix 6	AA6	A	143	145	Right-handed 310
Helix 7	AA7	A	146	159	Right-handed alpha
Helix 8	AA8	A	170	185	Right-handed alpha
Helix 9	AA9	A	204	213	Right-handed alpha
Helix 10	AB1	A	224	238	Right-handed alpha
Helix 11	AB2	A	251	255	Right-handed 310
Helix 12	AB3	A	256	261	Right-handed alpha
Helix 13	AB4	A	276	296	Right-handed alpha
Helix 14	AB5	A	317	327	Right-handed alpha
Helix 15	AB6	A	458	470	Right-handed alpha
Helix 16	AB7	A	501	506	Right-handed alpha
Helix 17	AB8	A	520	525	Right-handed alpha
Helix 18	AB9	A	558	582	Right-handed alpha
Helix 19	AC1	A	606	615	Right-handed alpha
Helix 20	AC2	A	629	654	Right-handed alpha
Helix 21	AC3	A	669	674	Right-handed alpha
Helix 22	AC4	A	687	695	Right-handed alpha
Helix 23	AC5	A	696	698	Right-handed 310
Helix 24	AC6	A	699	707	Right-handed alpha
Helix 25	AC7	A	713	723	Right-handed alpha
Helix 26	AC8	A	733	740	Right-handed alpha
Helix 27	AC9	A	766	782	Right-handed alpha
Helix 28	AD1	A	783	791	Right-handed alpha
Helix 29	AD2	A	810	830	Right-handed alpha
Helix 30	AD3	B	46	53	Right-handed alpha
Helix 31	AD4	B	77	92	Right-handed alpha
Helix 32	AD5	B	105	119	Right-handed alpha
Helix 33	AD6	B	128	132	Right-handed 310
Helix 34	AD7	B	149	164	Right-handed alpha
Helix 35	AD8	B	178	192	Right-handed alpha
Helix 36	AD9	B	214	222	Right-handed alpha
Helix 37	AE1	B	233	248	Right-handed alpha
Helix 38	AE2	B	259	264	Right-handed alpha
Helix 39	AE3	B	288	309	Right-handed alpha
Helix 40	AE4	B	335	340	Right-handed alpha
Helix 41	AE5	B	459	472	Right-handed alpha
Helix 42	AE6	B	496	503	Right-handed alpha
Helix 43	AE7	B	518	523	Right-handed alpha
Helix 44	AE8	B	555	569	Right-handed alpha
Helix 45	AE9	B	603	612	Right-handed alpha
Helix 46	AF1	B	631	657	Right-handed alpha
Helix 47	AF2	B	668	673	Right-handed alpha
Helix 48	AF3	B	689	696	Right-handed alpha
Helix 49	AF4	B	699	706	Right-handed alpha
Helix 50	AF5	B	713	724	Right-handed alpha
Helix 51	AF6	B	733	742	Right-handed alpha
Helix 52	AF7	B	772	787	Right-handed alpha
Helix 53	AF8	B	787	796	Right-handed alpha
Helix 54	AF9	B	822	840	Right-handed alpha
Helix 55	AG1	C	35	53	Right-handed alpha
Helix 56	AG2	C	70	82	Right-handed alpha
Helix 57	AG3	C	83	85	Right-handed 310
Helix 58	AG4	C	104	114	Right-handed alpha
Helix 59	AG5	C	125	130	Right-handed 310
Helix 60	AG6	C	143	145	Right-handed 310
Helix 61	AG7	C	146	158	Right-handed alpha
Helix 62	AG8	C	170	185	Right-handed alpha
Helix 63	AG9	C	204	213	Right-handed alpha
Helix 64	AH1	C	224	238	Right-handed alpha
Helix 65	AH2	C	251	255	Right-handed 310
Helix 66	AH3	C	256	261	Right-handed alpha
Helix 67	AH4	C	276	296	Right-handed alpha
Helix 68	AH5	C	317	327	Right-handed alpha
Helix 69	AH6	C	458	470	Right-handed alpha
Helix 70	AH7	C	501	507	Right-handed alpha
Helix 71	AH8	C	520	525	Right-handed alpha
Helix 72	AH9	C	558	581	Right-handed alpha
Helix 73	AI1	C	606	615	Right-handed alpha
Helix 74	AI2	C	635	657	Right-handed alpha
Helix 75	AI3	C	669	674	Right-handed alpha
Helix 76	AI4	C	687	695	Right-handed alpha
Helix 77	AI5	C	699	707	Right-handed alpha
Helix 78	AI6	C	713	723	Right-handed alpha
Helix 79	AI7	C	733	740	Right-handed alpha
Helix 80	AI8	C	766	782	Right-handed alpha
Helix 81	AI9	C	783	791	Right-handed alpha
Helix 82	AJ1	C	809	831	Right-handed alpha
Helix 83	AJ2	D	46	56	Right-handed alpha
Helix 84	AJ3	D	77	92	Right-handed alpha
Helix 85	AJ4	D	105	120	Right-handed alpha
Helix 86	AJ5	D	128	132	Right-handed 310
Helix 87	AJ6	D	149	164	Right-handed alpha
Helix 88	AJ7	D	178	192	Right-handed alpha
Helix 89	AJ8	D	214	221	Right-handed alpha
Helix 90	AJ9	D	233	246	Right-handed alpha
Helix 91	AK1	D	259	264	Right-handed alpha
Helix 92	AK2	D	288	312	Right-handed alpha
Helix 93	AK3	D	326	331	Right-handed 310
Helix 94	AK4	D	335	340	Right-handed alpha
Helix 95	AK5	D	459	473	Right-handed alpha
Helix 96	AK6	D	496	503	Right-handed alpha
Helix 97	AK7	D	518	522	Right-handed 310
Helix 98	AK8	D	555	567	Right-handed alpha
Helix 99	AK9	D	604	612	Right-handed alpha
Helix 100	AL1	D	631	654	Right-handed alpha
Helix 101	AL2	D	668	673	Right-handed alpha
Helix 102	AL3	D	689	696	Right-handed alpha
Helix 103	AL4	D	699	706	Right-handed alpha
Helix 104	AL5	D	713	724	Right-handed alpha
Helix 105	AL6	D	733	742	Right-handed alpha
Helix 106	AL7	D	772	787	Right-handed alpha
Helix 107	AL8	D	787	794	Right-handed alpha
Helix 108	AL9	D	821	837	Right-handed alpha

There are 31 sheets in PDB entry 4PE5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	66	first strand
Strand 2	A	26	33	parallel
Strand 3	A	87	92	parallel
Strand 4	A	118	120	parallel
Strand 5	A	137	139	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	197	first strand
Strand 2	A	162	168	parallel
Strand 3	A	218	222	parallel
Strand 4	A	246	248	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	271	first strand
Strand 2	A	351	357	anti-parallel
Strand 3	A	360	367	anti-parallel
Strand 4	A	372	374	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	333	first strand
Strand 2	A	336	340	anti-parallel
Strand 3	A	346	347	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	398	first strand
Strand 2	A	473	474	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	478	first strand
Strand 2	A	400	402	parallel
Strand 3	A	512	518	parallel
Strand 4	A	758	762	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	412	first strand
Strand 2	A	451	457	anti-parallel
Strand 3	A	434	438	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	485	489	first strand
Strand 2	A	496	500	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	682	first strand
Strand 2	A	728	732	parallel
Strand 3	A	538	543	anti-parallel
Strand 4	A	746	748	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	73	first strand
Strand 2	B	34	42	parallel
Strand 3	B	94	100	parallel
Strand 4	B	123	127	parallel
Strand 5	B	143	145	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	205	first strand
Strand 2	B	168	174	parallel
Strand 3	B	227	231	parallel
Strand 4	B	255	258	parallel
Strand 5	B	278	282	parallel
Strand 6	B	362	367	anti-parallel
Strand 7	B	373	380	anti-parallel
Strand 8	B	383	386	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	344	first strand
Strand 2	B	347	348	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	420	first strand
Strand 2	B	453	458	anti-parallel
Strand 3	B	434	438	anti-parallel
Strand 4	B	475	480	parallel
Strand 5	B	405	410	parallel
Strand 6	B	508	510	parallel
Strand 7	B	765	766	anti-parallel
Strand 8	B	524	525	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	683	684	first strand
Strand 2	B	728	732	parallel
Strand 3	B	531	538	anti-parallel
Strand 4	B	749	750	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	683	684	first strand
Strand 2	B	728	732	parallel
Strand 3	B	531	538	anti-parallel
Strand 4	B	757	761	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	66	first strand
Strand 2	C	26	33	parallel
Strand 3	C	87	92	parallel
Strand 4	C	118	120	parallel
Strand 5	C	137	139	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	190	197	first strand
Strand 2	C	162	168	parallel
Strand 3	C	218	222	parallel
Strand 4	C	246	248	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	271	first strand
Strand 2	C	351	357	anti-parallel
Strand 3	C	360	367	anti-parallel
Strand 4	C	372	374	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	330	333	first strand
Strand 2	C	336	340	anti-parallel
Strand 3	C	346	347	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	397	398	first strand
Strand 2	C	473	474	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	477	478	first strand
Strand 2	C	400	402	parallel
Strand 3	C	512	513	parallel
Strand 4	C	761	762	anti-parallel
Strand 5	C	528	529	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	412	first strand
Strand 2	C	450	457	anti-parallel
Strand 3	C	434	439	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	485	489	first strand
Strand 2	C	496	500	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	681	682	first strand
Strand 2	C	728	732	parallel
Strand 3	C	538	543	anti-parallel
Strand 4	C	746	748	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	73	first strand
Strand 2	D	34	42	parallel
Strand 3	D	94	100	parallel
Strand 4	D	123	127	parallel
Strand 5	D	143	145	parallel

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There are 8 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	205	first strand
Strand 2	D	168	174	parallel
Strand 3	D	227	231	parallel
Strand 4	D	255	258	parallel
Strand 5	D	278	282	parallel
Strand 6	D	361	367	anti-parallel
Strand 7	D	373	380	anti-parallel
Strand 8	D	383	386	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	343	344	first strand
Strand 2	D	347	348	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	475	480	first strand
Strand 2	D	405	410	parallel
Strand 3	D	508	510	parallel
Strand 4	D	765	766	anti-parallel
Strand 5	D	524	525	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	418	420	first strand
Strand 2	D	453	458	anti-parallel
Strand 3	D	434	438	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	683	684	first strand
Strand 2	D	728	732	parallel
Strand 3	D	531	538	anti-parallel
Strand 4	D	749	750	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	683	684	first strand
Strand 2	D	728	732	parallel
Strand 3	D	531	538	anti-parallel
Strand 4	D	757	761	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4PE5

Analysis of interatomic Contacts of Structural Units in PDB entry:
4PE5