Analysis of interatomic Contacts of Structural Units in PDB entry:
4PJE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PJE entry

There are 7 chains in PDB entry 4PJE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ARG 1VAL 269
B
MET 0ASP 98
C
ARG 1VAL 269
D
MET 0ASP 96
E
GLN 2PRO 198
F
GLY 3ALA 242
G
GLN 2LEU 97
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 4PJE. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
47 54Right-handed alpha
Helix 2
AA2
A
55 85Right-handed alpha
Helix 3
AA3
A
133 145Right-handed alpha
Helix 4
AA4
A
146 159Right-handed alpha
Helix 5
AA5
A
159 172Right-handed alpha
Helix 6
AA6
A
172 177Right-handed alpha
Helix 7
AA7
C
47 54Right-handed alpha
Helix 8
AA8
C
55 85Right-handed alpha
Helix 9
AA9
C
133 145Right-handed alpha
Helix 10
AB1
C
146 159Right-handed alpha
Helix 11
AB2
C
159 172Right-handed alpha
Helix 12
AB3
C
172 177Right-handed alpha
Helix 13
AB4
E
79 83Right-handed 310
Helix 14
AB5
E
162 165Right-handed 310
Helix 15
AB6
E
181 186Right-handed alpha
Helix 16
AB7
F
82 86Right-handed 310
Helix 17
AB8
F
130 138Right-handed alpha
Helix 18
AB9
F
197 202Right-handed alpha
Helix 19
AC1
G
79 83Right-handed 310
Helix 20
AC2
G
162 165Right-handed 310
Helix 21
AC3
G
181 186Right-handed alpha
Helix 22
AC4
H
82 86Right-handed 310
Helix 23
AC5
H
115 119Right-handed 310
Helix 24
AC6
H
130 138Right-handed alpha
Helix 25
AC7
H
197 201Right-handed alpha
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There are 35 sheets in PDB entry 4PJE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
44 45first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
22 28anti-parallel
Strand 4
A
3 12anti-parallel
Strand 5
A
91 100anti-parallel
Strand 6
A
106 114anti-parallel
Strand 7
A
117 123anti-parallel
Strand 8
A
128 131anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
183 190first strand
Strand 2
A
196 205anti-parallel
Strand 3
A
238 246anti-parallel
Strand 4
A
226 227anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
183 190first strand
Strand 2
A
196 205anti-parallel
Strand 3
A
238 246anti-parallel
Strand 4
A
231 232anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
219 220first strand
Strand 2
A
211 216anti-parallel
Strand 3
A
254 260anti-parallel
Strand 4
A
263 268anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
50 51anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
55 56anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
44 45first strand
Strand 2
B
36 41anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
91 94anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
44 45first strand
Strand 2
C
31 37anti-parallel
Strand 3
C
22 28anti-parallel
Strand 4
C
3 12anti-parallel
Strand 5
C
91 100anti-parallel
Strand 6
C
106 114anti-parallel
Strand 7
C
117 123anti-parallel
Strand 8
C
128 131anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
183 187first strand
Strand 2
C
198 205anti-parallel
Strand 3
C
238 244anti-parallel
Strand 4
C
226 227anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
183 187first strand
Strand 2
C
198 205anti-parallel
Strand 3
C
238 244anti-parallel
Strand 4
C
231 232anti-parallel
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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
211 216first strand
Strand 2
C
254 260anti-parallel
Strand 3
C
263 268anti-parallel
Strand 4
E
9 13anti-parallel
Strand 5
E
103 108parallel
Strand 6
E
84 91anti-parallel
Strand 7
E
32 37anti-parallel
Strand 8
E
44 49anti-parallel
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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
211 216first strand
Strand 2
C
254 260anti-parallel
Strand 3
C
263 268anti-parallel
Strand 4
E
9 13anti-parallel
Strand 5
E
103 108parallel
Strand 6
E
84 91anti-parallel
Strand 7
E
97 99anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
6 11first strand
Strand 2
D
21 30anti-parallel
Strand 3
D
62 70anti-parallel
Strand 4
D
50 51anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
6 11first strand
Strand 2
D
21 30anti-parallel
Strand 3
D
62 70anti-parallel
Strand 4
D
55 56anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
44 45first strand
Strand 2
D
36 41anti-parallel
Strand 3
D
78 83anti-parallel
Strand 4
D
91 94anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
3 5first strand
Strand 2
E
18 25anti-parallel
Strand 3
E
70 75anti-parallel
Strand 4
E
60 65anti-parallel
Strand 5
E
53 57anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
117 120first strand
Strand 2
E
132 135anti-parallel
Strand 3
E
166 174anti-parallel
Strand 4
E
152 153anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
117 120first strand
Strand 2
E
132 135anti-parallel
Strand 3
E
166 174anti-parallel
Strand 4
E
157 161anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
4 7first strand
Strand 2
F
19 25anti-parallel
Strand 3
F
74 78anti-parallel
Strand 4
F
64 68anti-parallel
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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
10 14first strand
Strand 2
F
108 113parallel
Strand 3
F
87 94anti-parallel
Strand 4
F
31 37anti-parallel
Strand 5
F
44 51anti-parallel
Strand 6
F
54 57anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
10 14first strand
Strand 2
F
108 113parallel
Strand 3
F
87 94anti-parallel
Strand 4
F
103 104anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
123 127first strand
Strand 2
F
139 149anti-parallel
Strand 3
F
187 196anti-parallel
Strand 4
F
169 171anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
123 127first strand
Strand 2
F
139 149anti-parallel
Strand 3
F
187 196anti-parallel
Strand 4
F
176 177anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
163 165first strand
Strand 2
F
154 160anti-parallel
Strand 3
F
206 213anti-parallel
Strand 4
F
232 239anti-parallel
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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
3 5first strand
Strand 2
G
18 25anti-parallel
Strand 3
G
70 75anti-parallel
Strand 4
G
60 65anti-parallel
Strand 5
G
53 57anti-parallel
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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
9 13first strand
Strand 2
G
103 108parallel
Strand 3
G
84 91anti-parallel
Strand 4
G
31 37anti-parallel
Strand 5
G
44 49anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
9 13first strand
Strand 2
G
103 108parallel
Strand 3
G
84 91anti-parallel
Strand 4
G
97 99anti-parallel
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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
117 120first strand
Strand 2
G
130 135anti-parallel
Strand 3
G
166 175anti-parallel
Strand 4
G
152 153anti-parallel
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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
117 120first strand
Strand 2
G
130 135anti-parallel
Strand 3
G
166 175anti-parallel
Strand 4
G
157 161anti-parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
4 7first strand
Strand 2
H
19 25anti-parallel
Strand 3
H
74 78anti-parallel
Strand 4
H
64 68anti-parallel
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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
10 14first strand
Strand 2
H
108 113parallel
Strand 3
H
87 94anti-parallel
Strand 4
H
31 37anti-parallel
Strand 5
H
44 51anti-parallel
Strand 6
H
54 57anti-parallel
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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
10 14first strand
Strand 2
H
108 113parallel
Strand 3
H
87 94anti-parallel
Strand 4
H
103 104anti-parallel
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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
123 127first strand
Strand 2
H
139 149anti-parallel
Strand 3
H
187 196anti-parallel
Strand 4
H
169 171anti-parallel
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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
123 127first strand
Strand 2
H
139 149anti-parallel
Strand 3
H
187 196anti-parallel
Strand 4
H
176 177anti-parallel
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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
163 165first strand
Strand 2
H
154 160anti-parallel
Strand 3
H
206 213anti-parallel
Strand 4
H
232 239anti-parallel
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