Analysis of interatomic Contacts of Structural Units in PDB entry:
4PMN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PMN entry

There are 2 chains in PDB entry 4PMN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 31ALA 240
B
 LEU 31ALA 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 4PMN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 57Right-handed alpha
Helix 2
AA2
A
82 92Right-handed alpha
Helix 3
AA3
A
104 111Right-handed 310
Helix 4
AA4
A
112 131Right-handed alpha
Helix 5
AA5
A
148 155Right-handed alpha
Helix 6
AA6
A
155 168Right-handed alpha
Helix 7
AA7
A
177 188Right-handed alpha
Helix 8
AA8
B
50 57Right-handed alpha
Helix 9
AA9
B
82 92Right-handed alpha
Helix 10
AB1
B
104 111Right-handed 310
Helix 11
AB2
B
112 131Right-handed alpha
Helix 12
AB3
B
148 155Right-handed alpha
Helix 13
AB4
B
155 168Right-handed alpha
Helix 14
AB5
B
177 188Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 4PMN. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
61 65parallel
Strand 3
A
95 100parallel
Strand 4
A
139 142parallel
Strand 5
A
172 176parallel
Strand 6
A
192 195parallel
Strand 7
A
211 221parallel
Strand 8
A
224 231anti-parallel
Strand 9
A
40 43anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 43first strand
Strand 2
B
61 65parallel
Strand 3
B
95 100parallel
Strand 4
B
139 142parallel
Strand 5
B
172 176parallel
Strand 6
B
192 195parallel
Strand 7
B
211 221parallel
Strand 8
B
224 231anti-parallel
Strand 9
B
40 43anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il