Analysis of interatomic Contacts of Structural Units in PDB entry:
4PXM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PXM entry

There are 4 chains in PDB entry 4PXM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 307LEU 549
B
SER 305ARG 548
C
ILE 689LEU 694
D
ILE 689GLN 695
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 4PXM. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
311 322Right-handed alpha
Helix 2
2
A
338 363Right-handed alpha
Helix 3
3
A
366 370Right-handed 310
Helix 4
4
A
371 396Right-handed alpha
Helix 5
5
A
412 416Right-handed alpha
Helix 6
6
A
420 438Right-handed alpha
Helix 7
7
A
441 456Right-handed alpha
Helix 8
8
A
474 493Right-handed alpha
Helix 9
9
A
496 531Right-handed alpha
Helix 10
10
A
537 546Right-handed alpha
Helix 11
11
B
305 310Right-handed 310
Helix 12
12
B
311 323Right-handed alpha
Helix 13
13
B
339 364Right-handed alpha
Helix 14
14
B
366 370Right-handed 310
Helix 15
15
B
371 396Right-handed alpha
Helix 16
16
B
413 418Right-handed 310
Helix 17
17
B
420 438Right-handed alpha
Helix 18
18
B
441 456Right-handed alpha
Helix 19
19
B
473 493Right-handed alpha
Helix 20
20
B
496 531Right-handed alpha
Helix 21
21
B
537 546Right-handed alpha
Helix 22
22
C
690 694Right-handed alpha
Helix 23
23
D
690 695Right-handed alpha
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There are 2 sheets in PDB entry 4PXM. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
401 405first strand
Strand 2
A
408 411anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
401 405first strand
Strand 2
B
408 411anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il