Analysis of interatomic Contacts of Structural Units in PDB entry:
4QDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4QDJ entry

There is 1 chain in PDB entry 4QDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2SER 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 4QDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 17Right-handed alpha
Helix 2
2
A
18 28Right-handed alpha
Helix 3
3
A
34 59Right-handed alpha
Helix 4
4
A
76 83Right-handed alpha
Helix 5
5
A
93 109Right-handed alpha
Helix 6
6
A
120 124Right-handed 310
Helix 7
7
A
136 140Right-handed 310
Helix 8
8
A
141 155Right-handed alpha
Helix 9
9
A
194 205Right-handed alpha
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There is 1 sheet ( A) in PDB entry 4QDJ.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 118first strand
Strand 2
A
86 91parallel
Strand 3
A
65 69parallel
Strand 4
A
128 133parallel
Strand 5
A
156 164parallel
Strand 6
A
221 229anti-parallel
Strand 7
A
207 216anti-parallel
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