Analysis of interatomic Contacts of Structural Units in PDB entry:
4QP0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4QP0 entry

There is 1 chain in PDB entry 4QP0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3LYS 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 4QP0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 32Right-handed 310
Helix 2
2
A
33 48Right-handed alpha
Helix 3
3
A
86 99Right-handed alpha
Helix 4
4
A
115 125Right-handed alpha
Helix 5
5
A
128 134Right-handed 310
Helix 6
6
A
135 152Right-handed alpha
Helix 7
7
A
160 164Right-handed 310
Helix 8
8
A
191 210Right-handed alpha
Helix 9
9
A
240 246Right-handed alpha
Helix 10
10
A
269 285Right-handed alpha
Helix 11
11
A
298 316Right-handed alpha
Helix 12
12
A
344 349Right-handed alpha
Helix 13
13
A
349 359Right-handed alpha
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There are 3 sheets in PDB entry 4QP0. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
11 14anti-parallel
Strand 3
A
17 18anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
167 171parallel
Strand 3
A
102 106parallel
Strand 4
A
51 55parallel
Strand 5
A
21 25parallel
Strand 6
A
320 323parallel
Strand 7
A
289 294parallel
Strand 8
A
253 257parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 70first strand
Strand 2
A
75 78anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il