Analysis of interatomic Contacts of Structural Units in PDB entry:
4RDD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RDD entry

There is 1 chain in PDB entry 4RDD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 262ARG 528
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 4RDD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
265 270Right-handed alpha
Helix 2
2
A
271 277Right-handed 310
Helix 3
3
A
334 336Right-handed 310
Helix 4
4
A
337 349Right-handed alpha
Helix 5
5
A
432 449Right-handed alpha
Helix 6
6
A
463 483Right-handed alpha
Helix 7
7
A
489 499Right-handed alpha
Helix 8
8
A
507 527Right-handed alpha
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There are 2 sheets in PDB entry 4RDD. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 291first strand
Strand 2
A
304 310anti-parallel
Strand 3
A
327 330anti-parallel
Strand 4
A
455 458parallel
Strand 5
A
352 355parallel
Strand 6
A
413 420parallel
Strand 7
A
396 405anti-parallel
Strand 8
A
383 392anti-parallel
Strand 9
A
377 380anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 361first strand
Strand 2
A
364 365anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il