Analysis of interatomic Contacts of Structural Units in PDB entry:
4RJF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RJF entry

There are 6 chains in PDB entry 4RJF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 255
B
 ARG 140SER 160
C
 MET 1ILE 255
D
 LYS 141SER 160
E
 MET 1ILE 255
F
 ARG 143SER 160
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4RJF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 18Right-handed alpha
Helix 2
2
A
55 57Right-handed 310
Helix 3
3
A
72 80Right-handed alpha
Helix 4
4
A
141 152Right-handed alpha
Helix 5
5
A
209 216Right-handed alpha
Helix 6
6
A
217 222Right-handed 310
Helix 7
7
B
146 150Right-handed 310
Helix 8
8
C
9 18Right-handed alpha
Helix 9
9
C
55 57Right-handed 310
Helix 10
10
C
72 80Right-handed alpha
Helix 11
11
C
141 152Right-handed alpha
Helix 12
12
C
209 216Right-handed alpha
Helix 13
13
C
217 222Right-handed 310
Helix 14
14
D
146 150Right-handed 310
Helix 15
15
E
9 18Right-handed alpha
Helix 16
16
E
72 80Right-handed alpha
Helix 17
17
E
141 152Right-handed alpha
Helix 18
18
E
209 216Right-handed alpha
Helix 19
19
E
217 222Right-handed 310
Helix 20
20
F
146 150Right-handed 310
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There are 13 sheets in PDB entry 4RJF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
2 6anti-parallel
Strand 3
A
87 92anti-parallel
Strand 4
A
98 104anti-parallel
Strand 5
A
111 117anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 71first strand
Strand 2
A
25 31anti-parallel
Strand 3
A
34 40anti-parallel
Strand 4
A
46 53anti-parallel
Strand 5
A
245 251anti-parallel
Strand 6
A
235 241anti-parallel
Strand 7
A
224 229anti-parallel
Strand 8
A
135 140anti-parallel
Strand 9
A
196 199anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 127first strand
Strand 2
B
152 158anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 183first strand
Strand 2
A
166 173anti-parallel
Strand 3
A
157 162anti-parallel
Strand 4
A
203 208anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 255first strand
Strand 2
B
143 144anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 62first strand
Strand 2
C
2 6anti-parallel
Strand 3
C
87 92anti-parallel
Strand 4
C
98 104anti-parallel
Strand 5
C
111 117anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 71first strand
Strand 2
C
25 31anti-parallel
Strand 3
C
34 40anti-parallel
Strand 4
C
46 53anti-parallel
Strand 5
C
245 251anti-parallel
Strand 6
C
235 241anti-parallel
Strand 7
C
224 229anti-parallel
Strand 8
C
135 140anti-parallel
Strand 9
C
196 199anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
121 127first strand
Strand 2
D
152 158anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
176 183first strand
Strand 2
C
166 173anti-parallel
Strand 3
C
157 163anti-parallel
Strand 4
C
203 208anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
59 62first strand
Strand 2
E
2 6anti-parallel
Strand 3
E
87 92anti-parallel
Strand 4
E
98 104anti-parallel
Strand 5
E
111 117anti-parallel
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There are 9 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
66 71first strand
Strand 2
E
25 30anti-parallel
Strand 3
E
34 40anti-parallel
Strand 4
E
46 53anti-parallel
Strand 5
E
245 251anti-parallel
Strand 6
E
235 241anti-parallel
Strand 7
E
224 229anti-parallel
Strand 8
E
135 140anti-parallel
Strand 9
E
196 199anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
122 126first strand
Strand 2
F
153 157anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
176 183first strand
Strand 2
E
166 173anti-parallel
Strand 3
E
157 162anti-parallel
Strand 4
E
203 208anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il