Analysis of interatomic Contacts of Structural Units in PDB entry:
4RN1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RN1 entry

There are 2 chains in PDB entry 4RN1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 14ILE 378
B
 SER 13VAL 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 4RN1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 29Right-handed alpha
Helix 2
2
A
36 48Right-handed alpha
Helix 3
3
A
49 54Right-handed 310
Helix 4
4
A
63 68Right-handed alpha
Helix 5
5
A
72 86Right-handed alpha
Helix 6
6
A
107 128Right-handed alpha
Helix 7
7
A
156 166Right-handed alpha
Helix 8
8
A
182 189Right-handed alpha
Helix 9
9
A
219 223Right-handed 310
Helix 10
10
A
236 256Right-handed alpha
Helix 11
11
A
280 293Right-handed alpha
Helix 12
12
A
307 324Right-handed alpha
Helix 13
13
A
336 341Right-handed 310
Helix 14
14
A
358 373Right-handed alpha
Helix 15
15
B
21 29Right-handed alpha
Helix 16
16
B
36 48Right-handed alpha
Helix 17
17
B
49 54Right-handed 310
Helix 18
18
B
63 68Right-handed alpha
Helix 19
19
B
72 83Right-handed alpha
Helix 20
20
B
107 128Right-handed alpha
Helix 21
21
B
156 166Right-handed alpha
Helix 22
22
B
182 189Right-handed alpha
Helix 23
23
B
219 223Right-handed 310
Helix 24
24
B
236 256Right-handed alpha
Helix 25
25
B
280 293Right-handed alpha
Helix 26
26
B
307 324Right-handed alpha
Helix 27
27
B
336 341Right-handed 310
Helix 28
28
B
358 373Right-handed alpha
Helix 29
29
B
374 376Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 4RN1. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
17 19parallel
Strand 3
A
133 136parallel
Strand 4
A
297 301parallel
Strand 5
A
259 263parallel
Strand 6
A
172 176parallel
Strand 7
A
195 202parallel
Strand 8
A
226 231parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 57first strand
Strand 2
B
17 19parallel
Strand 3
B
133 136parallel
Strand 4
B
297 301parallel
Strand 5
B
259 263parallel
Strand 6
B
172 176parallel
Strand 7
B
195 202parallel
Strand 8
B
226 231parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il