Analysis of interatomic Contacts of Structural Units in PDB entry:
4RNY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RNY entry

There are 2 chains in PDB entry 4RNY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 41PHE 403
B
 MET 41PHE 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 4RNY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
50 58Right-handed alpha
Helix 2
2
A
62 67Right-handed alpha
Helix 3
3
A
69 77Right-handed alpha
Helix 4
4
A
140 150Right-handed alpha
Helix 5
5
A
151 162Right-handed alpha
Helix 6
6
A
167 171Right-handed 310
Helix 7
7
A
251 255Right-handed 310
Helix 8
8
A
352 356Right-handed 310
Helix 9
9
A
365 389Right-handed alpha
Helix 10
10
B
50 58Right-handed alpha
Helix 11
11
B
62 67Right-handed alpha
Helix 12
12
B
69 77Right-handed alpha
Helix 13
13
B
140 150Right-handed alpha
Helix 14
14
B
151 162Right-handed alpha
Helix 15
15
B
167 171Right-handed 310
Helix 16
16
B
251 255Right-handed 310
Helix 17
17
B
352 357Right-handed 310
Helix 18
18
B
365 389Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 4RNY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
84 89anti-parallel
Strand 3
A
95 101anti-parallel
Strand 4
A
106 113anti-parallel
Strand 5
A
116 123anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 226first strand
Strand 2
A
218 219anti-parallel
Strand 3
A
206 212anti-parallel
Strand 4
A
189 203anti-parallel
Strand 5
A
176 186anti-parallel
Strand 6
A
127 136anti-parallel
Strand 7
A
397 401anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 242first strand
Strand 2
A
262 265anti-parallel
Strand 3
A
339 346anti-parallel
Strand 4
A
300 310anti-parallel
Strand 5
A
290 297anti-parallel
Strand 6
A
278 286anti-parallel
Strand 7
A
319 320anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 273first strand
Strand 2
A
325 329anti-parallel
Strand 3
A
300 310anti-parallel
Strand 4
A
339 346anti-parallel
Strand 5
A
349 351anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 45first strand
Strand 2
B
84 89anti-parallel
Strand 3
B
95 101anti-parallel
Strand 4
B
106 113anti-parallel
Strand 5
B
116 123anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 211first strand
Strand 2
B
189 203anti-parallel
Strand 3
B
176 186anti-parallel
Strand 4
B
127 136anti-parallel
Strand 5
B
397 401anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 219first strand
Strand 2
B
225 226anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 242first strand
Strand 2
B
262 265anti-parallel
Strand 3
B
339 346anti-parallel
Strand 4
B
300 310anti-parallel
Strand 5
B
290 297anti-parallel
Strand 6
B
278 286anti-parallel
Strand 7
B
319 320anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 273first strand
Strand 2
B
325 329anti-parallel
Strand 3
B
300 310anti-parallel
Strand 4
B
339 346anti-parallel
Strand 5
B
349 351anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il