Analysis of interatomic Contacts of Structural Units in PDB entry:
4RPP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RPP entry

There are 4 chains in PDB entry 4RPP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 24PRO 531
B
ALA 23PRO 531
C
ASP 24PRO 531
D
ASP 24PRO 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 82 helices in PDB entry 4RPP. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
25 32Right-handed alpha
Helix 2
2
A
57 68Right-handed alpha
Helix 3
3
A
80 96Right-handed alpha
Helix 4
4
A
97 99Right-handed 310
Helix 5
5
A
222 235Right-handed alpha
Helix 6
6
A
247 259Right-handed alpha
Helix 7
7
A
260 263Right-handed 310
Helix 8
8
A
273 279Right-handed alpha
Helix 9
9
A
279 287Right-handed alpha
Helix 10
10
A
294 301Right-handed alpha
Helix 11
11
A
302 321Right-handed alpha
Helix 12
12
A
331 336Right-handed 310
Helix 13
13
A
341 355Right-handed alpha
Helix 14
14
A
362 367Right-handed alpha
Helix 15
15
A
370 388Right-handed alpha
Helix 16
16
A
390 402Right-handed alpha
Helix 17
17
A
407 424Right-handed alpha
Helix 18
18
A
435 444Right-handed alpha
Helix 19
19
A
456 463Right-handed alpha
Helix 20
20
A
464 466Right-handed 310
Helix 21
21
A
481 500Right-handed alpha
Helix 22
22
B
25 32Right-handed alpha
Helix 23
23
B
57 68Right-handed alpha
Helix 24
24
B
80 96Right-handed alpha
Helix 25
25
B
97 99Right-handed 310
Helix 26
26
B
222 236Right-handed alpha
Helix 27
27
B
247 259Right-handed alpha
Helix 28
28
B
273 279Right-handed alpha
Helix 29
29
B
279 287Right-handed alpha
Helix 30
30
B
294 301Right-handed alpha
Helix 31
31
B
305 321Right-handed alpha
Helix 32
32
B
331 336Right-handed 310
Helix 33
33
B
341 355Right-handed alpha
Helix 34
34
B
362 367Right-handed alpha
Helix 35
35
B
370 388Right-handed alpha
Helix 36
36
B
390 402Right-handed alpha
Helix 37
37
B
407 423Right-handed alpha
Helix 38
38
B
435 444Right-handed alpha
Helix 39
39
B
456 463Right-handed alpha
Helix 40
40
B
464 466Right-handed 310
Helix 41
41
B
481 500Right-handed alpha
Helix 42
42
C
25 32Right-handed alpha
Helix 43
43
C
57 68Right-handed alpha
Helix 44
44
C
80 96Right-handed alpha
Helix 45
45
C
97 99Right-handed 310
Helix 46
46
C
222 236Right-handed alpha
Helix 47
47
C
247 259Right-handed alpha
Helix 48
48
C
273 279Right-handed alpha
Helix 49
49
C
279 287Right-handed alpha
Helix 50
50
C
294 301Right-handed alpha
Helix 51
51
C
302 321Right-handed alpha
Helix 52
52
C
331 336Right-handed 310
Helix 53
53
C
341 355Right-handed alpha
Helix 54
54
C
362 367Right-handed alpha
Helix 55
55
C
370 388Right-handed alpha
Helix 56
56
C
390 401Right-handed alpha
Helix 57
57
C
407 424Right-handed alpha
Helix 58
58
C
435 444Right-handed alpha
Helix 59
59
C
456 463Right-handed alpha
Helix 60
60
C
464 466Right-handed 310
Helix 61
61
C
481 500Right-handed alpha
Helix 62
62
D
25 32Right-handed alpha
Helix 63
63
D
57 68Right-handed alpha
Helix 64
64
D
80 96Right-handed alpha
Helix 65
65
D
97 99Right-handed 310
Helix 66
66
D
222 236Right-handed alpha
Helix 67
67
D
247 259Right-handed alpha
Helix 68
68
D
260 263Right-handed 310
Helix 69
69
D
273 279Right-handed alpha
Helix 70
70
D
279 287Right-handed alpha
Helix 71
71
D
294 301Right-handed alpha
Helix 72
72
D
302 321Right-handed alpha
Helix 73
73
D
331 336Right-handed 310
Helix 74
74
D
341 355Right-handed alpha
Helix 75
75
D
362 367Right-handed alpha
Helix 76
76
D
370 388Right-handed alpha
Helix 77
77
D
390 402Right-handed alpha
Helix 78
78
D
407 424Right-handed alpha
Helix 79
79
D
435 444Right-handed alpha
Helix 80
80
D
456 463Right-handed alpha
Helix 81
81
D
464 466Right-handed 310
Helix 82
82
D
481 500Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 4RPP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
46 50first strand
Strand 2
A
71 75parallel
Strand 3
A
109 113parallel
Strand 4
A
239 242parallel
Strand 5
A
266 271parallel
Strand 6
A
289 293parallel
Strand 7
A
324 327parallel
Strand 8
A
358 361parallel
Strand 9
A
46 50parallel
Back to list of sheets
Back to top of page

There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
469 473first strand
Strand 2
A
450 454parallel
Strand 3
A
428 431parallel
Strand 4
A
508 513parallel
Strand 5
A
524 529anti-parallel
Strand 6
C
524 529anti-parallel
Strand 7
C
508 513anti-parallel
Strand 8
C
428 431parallel
Strand 9
C
450 454parallel
Strand 10
C
469 473parallel
Back to list of sheets
Back to top of page

There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
46 50first strand
Strand 2
B
71 75parallel
Strand 3
B
109 113parallel
Strand 4
B
239 242parallel
Strand 5
B
266 271parallel
Strand 6
B
289 293parallel
Strand 7
B
324 327parallel
Strand 8
B
358 361parallel
Strand 9
B
46 50parallel
Back to list of sheets
Back to top of page

There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
469 473first strand
Strand 2
B
450 454parallel
Strand 3
B
428 431parallel
Strand 4
B
508 514parallel
Strand 5
B
522 529anti-parallel
Strand 6
D
522 529anti-parallel
Strand 7
D
508 514anti-parallel
Strand 8
D
428 431parallel
Strand 9
D
450 454parallel
Strand 10
D
469 473parallel
Back to list of sheets
Back to top of page

There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
46 50first strand
Strand 2
C
71 75parallel
Strand 3
C
109 113parallel
Strand 4
C
239 242parallel
Strand 5
C
266 271parallel
Strand 6
C
289 293parallel
Strand 7
C
324 327parallel
Strand 8
C
358 361parallel
Strand 9
C
46 50parallel
Back to list of sheets
Back to top of page

There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
46 50first strand
Strand 2
D
71 75parallel
Strand 3
D
109 113parallel
Strand 4
D
239 242parallel
Strand 5
D
266 271parallel
Strand 6
D
289 293parallel
Strand 7
D
324 327parallel
Strand 8
D
358 361parallel
Strand 9
D
46 50parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il