Analysis of interatomic Contacts of Structural Units in PDB entry:
4TNR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4TNR entry

There are 3 chains in PDB entry 4TNR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ASP 113	ASN 599
C	ASP 113	ASN 599
B	ASP 113	GLN 375

There are128 helices in PDB entry 4TNR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	129	137	Right-handed alpha
Helix 2	AA2	D	138	143	Right-handed alpha
Helix 3	AA3	D	144	147	Right-handed 310
Helix 4	AA4	D	150	156	Right-handed 310
Helix 5	AA5	D	163	186	Right-handed alpha
Helix 6	AA6	D	187	190	Right-handed 310
Helix 7	AA7	D	192	206	Right-handed alpha
Helix 8	AA8	D	214	220	Right-handed alpha
Helix 9	AA9	D	220	226	Right-handed alpha
Helix 10	AB1	D	232	249	Right-handed alpha
Helix 11	AB2	D	249	257	Right-handed alpha
Helix 12	AB3	D	260	274	Right-handed alpha
Helix 13	AB4	D	291	300	Right-handed 310
Helix 14	AB5	D	309	324	Right-handed alpha
Helix 15	AB6	D	330	337	Right-handed alpha
Helix 16	AB7	D	355	373	Right-handed alpha
Helix 17	AB8	D	376	394	Right-handed alpha
Helix 18	AB9	D	402	404	Right-handed 310
Helix 19	AC1	D	411	414	Right-handed 310
Helix 20	AC2	D	415	420	Right-handed alpha
Helix 21	AC3	D	421	423	Right-handed 310
Helix 22	AC4	D	424	432	Right-handed alpha
Helix 23	AC5	D	435	437	Right-handed 310
Helix 24	AC6	D	438	450	Right-handed alpha
Helix 25	AC7	D	469	474	Right-handed 310
Helix 26	AC8	D	475	483	Right-handed alpha
Helix 27	AC9	D	494	496	Right-handed 310
Helix 28	AD1	D	513	518	Right-handed 310
Helix 29	AD2	D	533	537	Right-handed 310
Helix 30	AD3	D	558	577	Right-handed alpha
Helix 31	AD4	D	583	588	Right-handed alpha
Helix 32	AD5	D	591	595	Right-handed 310
Helix 33	AD6	C	129	137	Right-handed alpha
Helix 34	AD7	C	138	143	Right-handed alpha
Helix 35	AD8	C	144	147	Right-handed 310
Helix 36	AD9	C	150	156	Right-handed 310
Helix 37	AE1	C	163	186	Right-handed alpha
Helix 38	AE2	C	187	190	Right-handed 310
Helix 39	AE3	C	192	206	Right-handed alpha
Helix 40	AE4	C	214	220	Right-handed alpha
Helix 41	AE5	C	220	226	Right-handed alpha
Helix 42	AE6	C	232	249	Right-handed alpha
Helix 43	AE7	C	249	257	Right-handed alpha
Helix 44	AE8	C	260	274	Right-handed alpha
Helix 45	AE9	C	291	300	Right-handed 310
Helix 46	AF1	C	309	324	Right-handed alpha
Helix 47	AF2	C	330	337	Right-handed alpha
Helix 48	AF3	C	355	373	Right-handed alpha
Helix 49	AF4	C	376	394	Right-handed alpha
Helix 50	AF5	C	402	404	Right-handed 310
Helix 51	AF6	C	411	414	Right-handed 310
Helix 52	AF7	C	415	420	Right-handed alpha
Helix 53	AF8	C	421	423	Right-handed 310
Helix 54	AF9	C	424	432	Right-handed alpha
Helix 55	AG1	C	435	437	Right-handed 310
Helix 56	AG2	C	438	450	Right-handed alpha
Helix 57	AG3	C	469	474	Right-handed 310
Helix 58	AG4	C	475	483	Right-handed alpha
Helix 59	AG5	C	494	496	Right-handed 310
Helix 60	AG6	C	513	518	Right-handed 310
Helix 61	AG7	C	533	537	Right-handed 310
Helix 62	AG8	C	558	577	Right-handed alpha
Helix 63	AG9	C	583	588	Right-handed alpha
Helix 64	AH1	C	591	595	Right-handed 310
Helix 65	AH2	B	129	137	Right-handed alpha
Helix 66	AH3	B	138	143	Right-handed alpha
Helix 67	AH4	B	144	147	Right-handed 310
Helix 68	AH5	B	150	156	Right-handed 310
Helix 69	AH6	B	163	186	Right-handed alpha
Helix 70	AH7	B	187	190	Right-handed 310
Helix 71	AH8	B	192	206	Right-handed alpha
Helix 72	AH9	B	214	220	Right-handed alpha
Helix 73	AI1	B	220	226	Right-handed alpha
Helix 74	AI2	B	232	249	Right-handed alpha
Helix 75	AI3	B	249	257	Right-handed alpha
Helix 76	AI4	B	260	274	Right-handed alpha
Helix 77	AI5	B	291	300	Right-handed 310
Helix 78	AI6	B	309	324	Right-handed alpha
Helix 79	AI7	B	330	337	Right-handed alpha
Helix 80	AI8	B	355	373	Right-handed alpha
Helix 81	AI9	B	376	394	Right-handed alpha
Helix 82	AJ1	B	402	404	Right-handed 310
Helix 83	AJ2	B	411	414	Right-handed 310
Helix 84	AJ3	B	415	420	Right-handed alpha
Helix 85	AJ4	B	421	423	Right-handed 310
Helix 86	AJ5	B	424	432	Right-handed alpha
Helix 87	AJ6	B	435	437	Right-handed 310
Helix 88	AJ7	B	438	450	Right-handed alpha
Helix 89	AJ8	B	469	474	Right-handed 310
Helix 90	AJ9	B	475	483	Right-handed alpha
Helix 91	AK1	B	494	496	Right-handed 310
Helix 92	AK2	B	513	518	Right-handed 310
Helix 93	AK3	B	533	537	Right-handed 310
Helix 94	AK4	B	558	577	Right-handed alpha
Helix 95	AK5	B	583	588	Right-handed alpha
Helix 96	AK6	B	591	595	Right-handed 310
Helix 97	AK7	A	129	137	Right-handed alpha
Helix 98	AK8	A	138	143	Right-handed alpha
Helix 99	AK9	A	144	147	Right-handed 310
Helix 100	AL1	A	150	156	Right-handed 310
Helix 101	AL2	A	163	186	Right-handed alpha
Helix 102	AL3	A	187	190	Right-handed 310
Helix 103	AL4	A	192	206	Right-handed alpha
Helix 104	AL5	A	214	220	Right-handed alpha
Helix 105	AL6	A	220	226	Right-handed alpha
Helix 106	AL7	A	232	249	Right-handed alpha
Helix 107	AL8	A	249	257	Right-handed alpha
Helix 108	AL9	A	260	274	Right-handed alpha
Helix 109	AM1	A	291	300	Right-handed 310
Helix 110	AM2	A	309	324	Right-handed alpha
Helix 111	AM3	A	330	337	Right-handed alpha
Helix 112	AM4	A	355	373	Right-handed alpha
Helix 113	AM5	A	376	394	Right-handed alpha
Helix 114	AM6	A	402	404	Right-handed 310
Helix 115	AM7	A	411	414	Right-handed 310
Helix 116	AM8	A	415	420	Right-handed alpha
Helix 117	AM9	A	421	423	Right-handed 310
Helix 118	AN1	A	424	432	Right-handed alpha
Helix 119	AN2	A	435	437	Right-handed 310
Helix 120	AN3	A	438	450	Right-handed alpha
Helix 121	AN4	A	469	474	Right-handed 310
Helix 122	AN5	A	475	483	Right-handed alpha
Helix 123	AN6	A	494	496	Right-handed 310
Helix 124	AN7	A	513	518	Right-handed 310
Helix 125	AN8	A	533	537	Right-handed 310
Helix 126	AN9	A	558	577	Right-handed alpha
Helix 127	AO1	A	583	588	Right-handed alpha
Helix 128	AO2	A	591	595	Right-handed 310

There are 16 sheets in PDB entry 4TNR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	120	first strand
Strand 2	D	124	128	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	343	first strand
Strand 2	D	346	352	anti-parallel
Strand 3	D	520	522	parallel
Strand 4	D	525	530	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	399	400	first strand
Strand 2	D	406	407	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	455	460	first strand
Strand 2	D	546	554	anti-parallel
Strand 3	D	498	506	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	120	first strand
Strand 2	C	124	128	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	343	first strand
Strand 2	C	346	352	anti-parallel
Strand 3	C	520	522	parallel
Strand 4	C	525	530	anti-parallel
Strand 5	C	338	343	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	399	400	first strand
Strand 2	C	406	407	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	460	first strand
Strand 2	C	546	554	anti-parallel
Strand 3	C	498	506	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	120	first strand
Strand 2	B	124	128	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	343	first strand
Strand 2	B	346	352	anti-parallel
Strand 3	B	520	522	parallel
Strand 4	B	525	530	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	400	first strand
Strand 2	B	406	407	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	460	first strand
Strand 2	B	546	554	anti-parallel
Strand 3	B	498	506	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	120	first strand
Strand 2	A	124	128	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	343	first strand
Strand 2	A	346	352	anti-parallel
Strand 3	A	520	522	parallel
Strand 4	A	525	530	anti-parallel
Strand 5	A	338	343	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	400	first strand
Strand 2	A	406	407	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	460	first strand
Strand 2	A	546	554	anti-parallel
Strand 3	A	498	506	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4TNR

Analysis of interatomic Contacts of Structural Units in PDB entry:
4TNR