Analysis of interatomic Contacts of Structural Units in PDB entry:
4U6P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4U6P entry

There are 6 chains in PDB entry 4U6P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 31ASN 518
B
 LEU 31ASN 518
C
 G 5 C 13
D
 T 2 C 14
P
 G 5 C 13
T
 T 2 C 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 4U6P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 45Right-handed alpha
Helix 2
AA2
A
47 73Right-handed alpha
Helix 3
AA3
A
75 96Right-handed alpha
Helix 4
AA4
A
110 120Right-handed alpha
Helix 5
AA5
A
121 124Right-handed 310
Helix 6
AA6
A
140 145Right-handed alpha
Helix 7
AA7
A
153 161Right-handed alpha
Helix 8
AA8
A
170 186Right-handed alpha
Helix 9
AA9
A
204 212Right-handed alpha
Helix 10
AB1
A
289 306Right-handed alpha
Helix 11
AB2
A
316 325Right-handed alpha
Helix 12
AB3
A
338 347Right-handed alpha
Helix 13
AB4
A
350 354Right-handed 310
Helix 14
AB5
A
358 368Right-handed alpha
Helix 15
AB6
A
372 379Right-handed alpha
Helix 16
AB7
A
379 387Right-handed alpha
Helix 17
AB8
A
388 400Right-handed alpha
Helix 18
AB9
A
427 450Right-handed alpha
Helix 19
AC1
A
480 498Right-handed alpha
Helix 20
AC2
B
32 45Right-handed alpha
Helix 21
AC3
B
47 73Right-handed alpha
Helix 22
AC4
B
75 96Right-handed alpha
Helix 23
AC5
B
110 120Right-handed alpha
Helix 24
AC6
B
121 124Right-handed 310
Helix 25
AC7
B
140 145Right-handed alpha
Helix 26
AC8
B
153 161Right-handed alpha
Helix 27
AC9
B
170 186Right-handed alpha
Helix 28
AD1
B
204 212Right-handed alpha
Helix 29
AD2
B
289 306Right-handed alpha
Helix 30
AD3
B
316 325Right-handed alpha
Helix 31
AD4
B
338 347Right-handed alpha
Helix 32
AD5
B
350 354Right-handed 310
Helix 33
AD6
B
358 368Right-handed alpha
Helix 34
AD7
B
372 379Right-handed alpha
Helix 35
AD8
B
379 387Right-handed alpha
Helix 36
AD9
B
388 400Right-handed alpha
Helix 37
AE1
B
427 450Right-handed alpha
Helix 38
AE2
B
480 498Right-handed alpha
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There are 8 sheets in PDB entry 4U6P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
199 203anti-parallel
Strand 3
A
103 108anti-parallel
Strand 4
A
309 314anti-parallel
Strand 5
A
332 334parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 139first strand
Strand 2
A
128 131anti-parallel
Strand 3
A
165 167parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 222first strand
Strand 2
A
283 285anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 425first strand
Strand 2
A
506 514anti-parallel
Strand 3
A
453 462anti-parallel
Strand 4
A
467 478anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 194first strand
Strand 2
B
199 203anti-parallel
Strand 3
B
103 108anti-parallel
Strand 4
B
309 314anti-parallel
Strand 5
B
332 334parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 139first strand
Strand 2
B
128 131anti-parallel
Strand 3
B
165 167parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 222first strand
Strand 2
B
283 285anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
415 425first strand
Strand 2
B
506 514anti-parallel
Strand 3
B
453 462anti-parallel
Strand 4
B
467 478anti-parallel
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