Analysis of interatomic Contacts of Structural Units in PDB entry:
4U7D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4U7D entry

There are 3 chains in PDB entry 4U7D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 63LYS 592
B
SER 63LYS 592
C
SER 63GLY 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are100 helices in PDB entry 4U7D. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
65 69Right-handed 310
Helix 2
AA2
A
75 86Right-handed alpha
Helix 3
AA3
A
95 105Right-handed alpha
Helix 4
AA4
A
120 129Right-handed alpha
Helix 5
AA5
A
140 155Right-handed alpha
Helix 6
AA6
A
166 179Right-handed alpha
Helix 7
AA7
A
190 196Right-handed alpha
Helix 8
AA8
A
197 210Right-handed alpha
Helix 9
AA9
A
221 225Right-handed 310
Helix 10
AB1
A
232 238Right-handed 310
Helix 11
AB2
A
239 245Right-handed alpha
Helix 12
AB3
A
258 269Right-handed alpha
Helix 13
AB4
A
296 309Right-handed alpha
Helix 14
AB5
A
323 337Right-handed alpha
Helix 15
AB6
A
349 362Right-handed alpha
Helix 16
AB7
A
394 403Right-handed alpha
Helix 17
AB8
A
419 430Right-handed alpha
Helix 18
AB9
A
435 448Right-handed alpha
Helix 19
AC1
A
453 463Right-handed alpha
Helix 20
AC2
A
475 480Right-handed alpha
Helix 21
AC3
A
489 506Right-handed alpha
Helix 22
AC4
A
511 520Right-handed alpha
Helix 23
AC5
A
524 528Right-handed 310
Helix 24
AC6
A
538 552Right-handed alpha
Helix 25
AC7
A
574 581Right-handed 310
Helix 26
AC8
B
65 69Right-handed 310
Helix 27
AC9
B
75 86Right-handed alpha
Helix 28
AD1
B
95 105Right-handed alpha
Helix 29
AD2
B
120 129Right-handed alpha
Helix 30
AD3
B
140 155Right-handed alpha
Helix 31
AD4
B
166 179Right-handed alpha
Helix 32
AD5
B
190 196Right-handed alpha
Helix 33
AD6
B
197 210Right-handed alpha
Helix 34
AD7
B
221 225Right-handed 310
Helix 35
AD8
B
232 238Right-handed 310
Helix 36
AD9
B
239 245Right-handed alpha
Helix 37
AE1
B
258 269Right-handed alpha
Helix 38
AE2
B
296 309Right-handed alpha
Helix 39
AE3
B
323 337Right-handed alpha
Helix 40
AE4
B
349 362Right-handed alpha
Helix 41
AE5
B
394 403Right-handed alpha
Helix 42
AE6
B
419 430Right-handed alpha
Helix 43
AE7
B
435 449Right-handed alpha
Helix 44
AE8
B
453 463Right-handed alpha
Helix 45
AE9
B
475 480Right-handed alpha
Helix 46
AF1
B
489 506Right-handed alpha
Helix 47
AF2
B
511 520Right-handed alpha
Helix 48
AF3
B
524 528Right-handed 310
Helix 49
AF4
B
538 552Right-handed alpha
Helix 50
AF5
B
574 581Right-handed 310
Helix 51
AF6
C
64 69Right-handed 310
Helix 52
AF7
C
75 86Right-handed alpha
Helix 53
AF8
C
95 105Right-handed alpha
Helix 54
AF9
C
120 129Right-handed alpha
Helix 55
AG1
C
140 154Right-handed alpha
Helix 56
AG2
C
166 179Right-handed alpha
Helix 57
AG3
C
190 196Right-handed alpha
Helix 58
AG4
C
197 210Right-handed alpha
Helix 59
AG5
C
221 225Right-handed 310
Helix 60
AG6
C
232 238Right-handed 310
Helix 61
AG7
C
239 245Right-handed alpha
Helix 62
AG8
C
258 269Right-handed alpha
Helix 63
AG9
C
296 309Right-handed alpha
Helix 64
AH1
C
323 337Right-handed alpha
Helix 65
AH2
C
349 362Right-handed alpha
Helix 66
AH3
C
394 403Right-handed alpha
Helix 67
AH4
C
419 430Right-handed alpha
Helix 68
AH5
C
435 449Right-handed alpha
Helix 69
AH6
C
453 463Right-handed alpha
Helix 70
AH7
C
475 480Right-handed alpha
Helix 71
AH8
C
489 506Right-handed alpha
Helix 72
AH9
C
511 520Right-handed alpha
Helix 73
AI1
C
524 528Right-handed 310
Helix 74
AI2
C
538 552Right-handed alpha
Helix 75
AI3
C
574 581Right-handed 310
Helix 76
AI4
D
64 69Right-handed 310
Helix 77
AI5
D
75 86Right-handed alpha
Helix 78
AI6
D
95 105Right-handed alpha
Helix 79
AI7
D
120 129Right-handed alpha
Helix 80
AI8
D
140 154Right-handed alpha
Helix 81
AI9
D
166 179Right-handed alpha
Helix 82
AJ1
D
190 196Right-handed alpha
Helix 83
AJ2
D
197 210Right-handed alpha
Helix 84
AJ3
D
221 225Right-handed 310
Helix 85
AJ4
D
232 238Right-handed 310
Helix 86
AJ5
D
239 245Right-handed alpha
Helix 87
AJ6
D
258 269Right-handed alpha
Helix 88
AJ7
D
296 309Right-handed alpha
Helix 89
AJ8
D
323 337Right-handed alpha
Helix 90
AJ9
D
349 362Right-handed alpha
Helix 91
AK1
D
394 403Right-handed alpha
Helix 92
AK2
D
419 430Right-handed alpha
Helix 93
AK3
D
435 448Right-handed alpha
Helix 94
AK4
D
453 463Right-handed alpha
Helix 95
AK5
D
475 480Right-handed alpha
Helix 96
AK6
D
489 506Right-handed alpha
Helix 97
AK7
D
511 520Right-handed alpha
Helix 98
AK8
D
524 528Right-handed 310
Helix 99
AK9
D
538 552Right-handed alpha
Helix 100
AL1
D
574 581Right-handed 310
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There are 16 sheets in PDB entry 4U7D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
158 160first strand
Strand 2
A
186 189parallel
Strand 3
A
133 137parallel
Strand 4
A
213 219parallel
Strand 5
A
249 254parallel
Strand 6
A
109 112parallel
Strand 7
A
275 278parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
286 292first strand
Strand 2
A
412 418parallel
Strand 3
A
383 388parallel
Strand 4
A
316 320parallel
Strand 5
A
367 370parallel
Strand 6
A
341 344parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
484 488first strand
Strand 2
A
587 591anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
555 561first strand
Strand 2
A
566 572anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
158 160first strand
Strand 2
B
186 189parallel
Strand 3
B
133 137parallel
Strand 4
B
213 219parallel
Strand 5
B
249 254parallel
Strand 6
B
109 112parallel
Strand 7
B
275 278parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
286 292first strand
Strand 2
B
412 418parallel
Strand 3
B
383 388parallel
Strand 4
B
316 320parallel
Strand 5
B
367 370parallel
Strand 6
B
341 344parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
484 488first strand
Strand 2
B
587 591anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
555 561first strand
Strand 2
B
566 572anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
158 160first strand
Strand 2
C
186 189parallel
Strand 3
C
133 137parallel
Strand 4
C
213 219parallel
Strand 5
C
249 254parallel
Strand 6
C
109 112parallel
Strand 7
C
275 278parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
286 292first strand
Strand 2
C
412 418parallel
Strand 3
C
383 388parallel
Strand 4
C
316 320parallel
Strand 5
C
367 370parallel
Strand 6
C
341 344parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
484 488first strand
Strand 2
C
587 591anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
555 561first strand
Strand 2
C
566 572anti-parallel
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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
158 160first strand
Strand 2
D
186 189parallel
Strand 3
D
133 137parallel
Strand 4
D
213 219parallel
Strand 5
D
249 254parallel
Strand 6
D
109 112parallel
Strand 7
D
275 278parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
286 292first strand
Strand 2
D
412 418parallel
Strand 3
D
383 388parallel
Strand 4
D
316 320parallel
Strand 5
D
367 370parallel
Strand 6
D
341 344parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
484 488first strand
Strand 2
D
587 591anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
555 561first strand
Strand 2
D
566 572anti-parallel
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