Analysis of interatomic Contacts of Structural Units in PDB entry:
4UAJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UAJ entry

There is 1 chain in PDB entry 4UAJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 129GLY 408
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4UAJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
155 158Right-handed 310
Helix 2
AA2
A
180 182Right-handed 310
Helix 3
AA3
A
185 195Right-handed alpha
Helix 4
AA4
A
196 199Right-handed 310
Helix 5
AA5
A
243 252Right-handed alpha
Helix 6
AA6
A
284 297Right-handed alpha
Helix 7
AA7
A
313 317Right-handed 310
Helix 8
AA8
A
319 330Right-handed alpha
Helix 9
AA9
A
343 347Right-handed 310
Helix 10
AB1
A
354 363Right-handed alpha
Helix 11
AB2
A
380 393Right-handed alpha
Helix 12
AB3
A
397 399Right-handed 310
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There are 3 sheets in PDB entry 4UAJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 213first strand
Strand 2
A
167 172anti-parallel
Strand 3
A
257 264anti-parallel
Strand 4
A
131 142anti-parallel
Strand 5
A
147 153anti-parallel
Strand 6
A
223 229anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 178first strand
Strand 2
A
201 204anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 352first strand
Strand 2
A
333 339parallel
Strand 3
A
305 311parallel
Strand 4
A
275 281parallel
Strand 5
A
373 378parallel
Strand 6
A
401 403parallel
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