Analysis of interatomic Contacts of Structural Units in PDB entry:
4UI2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UI2 entry

There are 4 chains in PDB entry 4UI2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 883PRO 1083
B
LYS 293ARG 396
C
ALA 52ASP 168
D
PRO 169ASP 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 4UI2. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
1032 1036Right-handed 310
Helix 2
2
B
332 337Right-handed alpha
Helix 3
3
B
340 353Right-handed alpha
Helix 4
4
C
55 69Right-handed alpha
Helix 5
5
C
80 95Right-handed alpha
Helix 6
6
C
96 100Right-handed 310
Helix 7
7
C
102 116Right-handed alpha
Helix 8
8
D
275 277Right-handed 310
Helix 9
9
D
297 301Right-handed alpha
Helix 10
10
D
310 315Right-handed alpha
Helix 11
11
D
317 320Right-handed 310
Back to top of page

There are 13 sheets in PDB entry 4UI2. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, BA, BB, BC, A, DB,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
889 897first strand
Strand 2
A
900 906anti-parallel
Strand 3
A
945 948anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
937 941first strand
Strand 2
A
921 927anti-parallel
Strand 3
A
956 965anti-parallel
Strand 4
A
968 969anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
937 941first strand
Strand 2
A
921 927anti-parallel
Strand 3
A
956 965anti-parallel
Strand 4
A
976 979anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
968 969first strand
Strand 2
A
956 965anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
990 996first strand
Strand 2
A
1004 1009anti-parallel
Strand 3
A
1047 1050anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1037 1042first strand
Strand 2
A
1018 1026anti-parallel
Strand 3
A
1058 1067anti-parallel
Strand 4
A
1070 1074anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1037 1042first strand
Strand 2
A
1018 1026anti-parallel
Strand 3
A
1058 1067anti-parallel
Strand 4
A
1078 1081anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1070 1074first strand
Strand 2
A
1058 1067anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
297 299first strand
Strand 2
B
324 326anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
302 304first strand
Strand 2
B
319 321anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
361 374first strand
Strand 2
B
380 395anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
178 180first strand
Strand 2
D
170 172anti-parallel
Strand 3
C
160 166anti-parallel
Strand 4
D
288 296anti-parallel
Strand 5
D
278 285anti-parallel
Strand 6
D
268 273anti-parallel
Strand 7
D
258 263anti-parallel
Strand 8
D
249 250anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
185 191first strand
Strand 2
D
195 203anti-parallel
Strand 3
D
211 220anti-parallel
Strand 4
D
230 235anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il