Analysis of interatomic Contacts of Structural Units in PDB entry:
4UJ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UJ3 entry

There are 24 chains in PDB entry 4UJ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ARG 4LYS 179
B
VAL 291GLU 458
C
LEU 720VAL 755
D
ARG 4MET 181
E
ILE 290LEU 460
F
LEU 720LYS 756
G
ASP 5LYS 179
H
CYS 294GLU 458
I
SER 716LYS 756
J
ARG 4LYS 179
K
ILE 290GLU 459
L
GLU 719LYS 756
M
ASP 6MET 181
N
ILE 290GLU 459
O
LEU 720LYS 756
P
ASP 5LYS 179
Q
VAL 291GLU 459
R
LEU 720LYS 756
S
GLU 7LYS 179
T
PRO 289LEU 460
U
LEU 720LYS 756
V
GLU 7GLN 178
W
ASP 293GLU 459
X
MET 721LYS 756
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are113 helices in PDB entry 4UJ3. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
23 34Right-handed alpha
Helix 2
2
A
76 82Right-handed alpha
Helix 3
3
A
95 101Right-handed alpha
Helix 4
4
A
101 113Right-handed alpha
Helix 5
5
A
135 146Right-handed alpha
Helix 6
6
A
160 179Right-handed alpha
Helix 7
7
B
298 311Right-handed alpha
Helix 8
8
B
318 328Right-handed alpha
Helix 9
9
B
328 333Right-handed alpha
Helix 10
10
B
337 350Right-handed alpha
Helix 11
11
B
404 426Right-handed alpha
Helix 12
12
B
433 453Right-handed alpha
Helix 13
13
C
720 749Right-handed alpha
Helix 14
14
C
750 753Right-handed 310
Helix 15
15
D
23 34Right-handed alpha
Helix 16
16
D
76 82Right-handed alpha
Helix 17
17
D
95 101Right-handed alpha
Helix 18
18
D
101 113Right-handed alpha
Helix 19
19
D
135 146Right-handed alpha
Helix 20
20
D
160 180Right-handed alpha
Helix 21
21
E
298 311Right-handed alpha
Helix 22
22
E
318 328Right-handed alpha
Helix 23
23
E
328 333Right-handed alpha
Helix 24
24
E
337 350Right-handed alpha
Helix 25
25
E
404 426Right-handed alpha
Helix 26
26
E
433 453Right-handed alpha
Helix 27
27
F
722 749Right-handed alpha
Helix 28
28
F
750 753Right-handed 310
Helix 29
29
G
23 34Right-handed alpha
Helix 30
30
G
76 82Right-handed alpha
Helix 31
31
G
95 101Right-handed alpha
Helix 32
32
G
101 113Right-handed alpha
Helix 33
33
G
135 146Right-handed alpha
Helix 34
34
G
160 179Right-handed alpha
Helix 35
35
H
298 311Right-handed alpha
Helix 36
36
H
318 328Right-handed alpha
Helix 37
37
H
328 333Right-handed alpha
Helix 38
38
H
337 350Right-handed alpha
Helix 39
39
H
404 426Right-handed alpha
Helix 40
40
H
433 453Right-handed alpha
Helix 41
41
I
719 748Right-handed alpha
Helix 42
42
I
749 753Right-handed 310
Helix 43
43
J
23 34Right-handed alpha
Helix 44
44
J
76 82Right-handed alpha
Helix 45
45
J
95 101Right-handed alpha
Helix 46
46
J
101 113Right-handed alpha
Helix 47
47
J
135 146Right-handed alpha
Helix 48
48
J
160 179Right-handed alpha
Helix 49
49
K
298 311Right-handed alpha
Helix 50
50
K
318 328Right-handed alpha
Helix 51
51
K
328 333Right-handed alpha
Helix 52
52
K
337 350Right-handed alpha
Helix 53
53
K
404 426Right-handed alpha
Helix 54
54
K
433 453Right-handed alpha
Helix 55
55
L
719 748Right-handed alpha
Helix 56
56
L
749 753Right-handed 310
Helix 57
57
M
23 34Right-handed alpha
Helix 58
58
M
76 82Right-handed alpha
Helix 59
59
M
95 101Right-handed alpha
Helix 60
60
M
101 113Right-handed alpha
Helix 61
61
M
135 146Right-handed alpha
Helix 62
62
M
160 179Right-handed alpha
Helix 63
63
N
298 311Right-handed alpha
Helix 64
64
N
318 328Right-handed alpha
Helix 65
65
N
328 333Right-handed alpha
Helix 66
66
N
337 350Right-handed alpha
Helix 67
67
N
404 426Right-handed alpha
Helix 68
68
N
433 453Right-handed alpha
Helix 69
69
O
722 748Right-handed alpha
Helix 70
70
O
749 753Right-handed 310
Helix 71
71
P
23 34Right-handed alpha
Helix 72
72
P
76 82Right-handed alpha
Helix 73
73
P
96 101Right-handed alpha
Helix 74
74
P
101 113Right-handed alpha
Helix 75
75
P
135 146Right-handed alpha
Helix 76
76
P
160 179Right-handed alpha
Helix 77
77
Q
298 311Right-handed alpha
Helix 78
78
Q
318 328Right-handed alpha
Helix 79
79
Q
328 333Right-handed alpha
Helix 80
80
Q
337 350Right-handed alpha
Helix 81
81
Q
370 374Right-handed 310
Helix 82
82
Q
404 426Right-handed alpha
Helix 83
83
Q
433 453Right-handed alpha
Helix 84
84
R
722 748Right-handed alpha
Helix 85
85
R
749 753Right-handed 310
Helix 86
86
S
23 34Right-handed alpha
Helix 87
87
S
77 82Right-handed alpha
Helix 88
88
S
95 101Right-handed alpha
Helix 89
89
S
101 113Right-handed alpha
Helix 90
90
S
135 146Right-handed alpha
Helix 91
91
S
160 179Right-handed alpha
Helix 92
92
T
298 311Right-handed alpha
Helix 93
93
T
318 328Right-handed alpha
Helix 94
94
T
328 333Right-handed alpha
Helix 95
95
T
337 350Right-handed alpha
Helix 96
96
T
404 426Right-handed alpha
Helix 97
97
T
433 453Right-handed alpha
Helix 98
98
U
721 748Right-handed alpha
Helix 99
99
U
749 753Right-handed 310
Helix 100
100
V
23 34Right-handed alpha
Helix 101
101
V
77 82Right-handed alpha
Helix 102
102
V
95 101Right-handed alpha
Helix 103
103
V
101 113Right-handed alpha
Helix 104
104
V
135 146Right-handed alpha
Helix 105
105
V
160 178Right-handed alpha
Helix 106
106
W
298 311Right-handed alpha
Helix 107
107
W
318 328Right-handed alpha
Helix 108
108
W
328 333Right-handed alpha
Helix 109
109
W
337 350Right-handed alpha
Helix 110
110
W
404 426Right-handed alpha
Helix 111
111
W
433 453Right-handed alpha
Helix 112
112
X
722 748Right-handed alpha
Helix 113
113
X
749 753Right-handed 310
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There are 19 sheets in PDB entry 4UJ3. Click on sheet of interest to get list of strands forming it: AA, BA, BB, A, EA, EB, EC, GA, HA, JA, KA, MA, NA, PA, QA, SA, TA, VA, WA,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
46 55first strand
Strand 2
A
58 67anti-parallel
Strand 3
A
10 18parallel
Strand 4
A
84 92parallel
Strand 5
A
118 124parallel
Strand 6
A
149 152parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
293 295first strand
Strand 2
H
455 457anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
354 357first strand
Strand 2
B
390 393anti-parallel
Strand 3
B
400 403anti-parallel
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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
46 55first strand
Strand 2
D
58 67anti-parallel
Strand 3
D
10 18parallel
Strand 4
D
86 92parallel
Strand 5
D
118 124parallel
Strand 6
D
149 153parallel
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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
292 295first strand
Strand 2
K
455 458anti-parallel
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There are 3 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
354 357first strand
Strand 2
E
390 393anti-parallel
Strand 3
E
400 403anti-parallel
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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
455 459first strand
Strand 2
K
291 295anti-parallel
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There are 6 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
46 55first strand
Strand 2
G
58 67anti-parallel
Strand 3
G
10 18parallel
Strand 4
G
86 92parallel
Strand 5
G
118 124parallel
Strand 6
G
149 153parallel
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There are 3 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
354 357first strand
Strand 2
H
390 393anti-parallel
Strand 3
H
400 403anti-parallel
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There are 6 strands in JA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
46 55first strand
Strand 2
J
58 67anti-parallel
Strand 3
J
10 18parallel
Strand 4
J
84 92parallel
Strand 5
J
118 124parallel
Strand 6
J
149 152parallel
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There are 3 strands in KA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
354 357first strand
Strand 2
K
390 393anti-parallel
Strand 3
K
401 403anti-parallel
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There are 6 strands in MA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
46 55first strand
Strand 2
M
58 67anti-parallel
Strand 3
M
10 18parallel
Strand 4
M
84 92parallel
Strand 5
M
118 124parallel
Strand 6
M
149 150parallel
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There are 3 strands in NA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
354 357first strand
Strand 2
N
390 393anti-parallel
Strand 3
N
400 403anti-parallel
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There are 6 strands in PA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
46 55first strand
Strand 2
P
58 67anti-parallel
Strand 3
P
10 18parallel
Strand 4
P
84 92parallel
Strand 5
P
118 124parallel
Strand 6
P
149 152parallel
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There are 3 strands in QA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
354 357first strand
Strand 2
Q
390 393anti-parallel
Strand 3
Q
400 403anti-parallel
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There are 6 strands in SA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
46 55first strand
Strand 2
S
58 67anti-parallel
Strand 3
S
10 18parallel
Strand 4
S
86 92parallel
Strand 5
S
118 124parallel
Strand 6
S
149 152parallel
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There are 3 strands in TA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
354 357first strand
Strand 2
T
390 393anti-parallel
Strand 3
T
401 403anti-parallel
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There are 6 strands in VA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
V
46 55first strand
Strand 2
V
58 67anti-parallel
Strand 3
V
10 18parallel
Strand 4
V
86 92parallel
Strand 5
V
118 124parallel
Strand 6
V
149 152parallel
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There are 3 strands in WA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
W
354 357first strand
Strand 2
W
390 393anti-parallel
Strand 3
W
401 403anti-parallel
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