Analysis of interatomic Contacts of Structural Units in PDB entry:
4UJA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UJA entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 4UJA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 13TRP 196
A
LEU 198VAL 337
A
ILE 339PHE 350
B
THR 5ASP 24
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4UJA. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
13 32Right-handed alpha
Helix 2
2
A
39 41Right-handed 310
Helix 3
3
A
76 82Right-handed alpha
Helix 4
4
A
84 96Right-handed alpha
Helix 5
5
A
127 136Right-handed alpha
Helix 6
6
A
139 160Right-handed alpha
Helix 7
7
A
168 170Right-handed 310
Helix 8
8
A
201 205Right-handed 310
Helix 9
9
A
206 211Right-handed alpha
Helix 10
10
A
217 234Right-handed alpha
Helix 11
11
A
242 253Right-handed alpha
Helix 12
12
A
262 273Right-handed alpha
Helix 13
13
A
276 280Right-handed 310
Helix 14
14
A
288 293Right-handed alpha
Helix 15
15
A
294 298Right-handed 310
Helix 16
16
A
301 307Right-handed alpha
Helix 17
17
B
5 12Right-handed alpha
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There are 3 sheets in PDB entry 4UJA. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
43 51first strand
Strand 2
A
55 62anti-parallel
Strand 3
A
68 75anti-parallel
Strand 4
A
115 121anti-parallel
Strand 5
A
106 111anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
162 163first strand
Strand 2
A
189 190anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
172 174first strand
Strand 2
A
180 182anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il