Analysis of interatomic Contacts of Structural Units in PDB entry:
4UML


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UML entry

There is 1 chain in PDB entry 4UML (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 7LEU 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 4UML. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 16Right-handed 310
Helix 2
2
A
49 54Right-handed alpha
Helix 3
3
A
62 65Right-handed 310
Helix 4
4
A
83 94Right-handed alpha
Helix 5
5
A
96 105Right-handed alpha
Helix 6
6
A
134 136Right-handed 310
Helix 7
7
A
137 159Right-handed alpha
Helix 8
8
A
171 175Right-handed 310
Helix 9
9
A
177 197Right-handed alpha
Helix 10
10
A
198 200Right-handed 310
Helix 11
11
A
208 223Right-handed alpha
Back to top of page

There is 1 sheet ( AA) in PDB entry 4UML.

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
202 207parallel
Strand 3
A
163 166parallel
Strand 4
A
70 74parallel
Strand 5
A
124 128parallel
Strand 6
A
112 116anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il