Analysis of interatomic Contacts of Structural Units in PDB entry:
4UMW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UMW entry

There is 1 chain in PDB entry 4UMW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 124ARG 730
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 4UMW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
128 145Right-handed alpha
Helix 2
2
A
148 177Right-handed alpha
Helix 3
3
A
182 197Right-handed alpha
Helix 4
4
A
199 220Right-handed alpha
Helix 5
5
A
228 233Right-handed alpha
Helix 6
6
A
284 289Right-handed alpha
Helix 7
7
A
324 339Right-handed alpha
Helix 8
8
A
345 373Right-handed alpha
Helix 9
9
A
376 392Right-handed alpha
Helix 10
10
A
395 414Right-handed alpha
Helix 11
11
A
420 429Right-handed alpha
Helix 12
12
A
458 471Right-handed alpha
Helix 13
13
A
475 488Right-handed alpha
Helix 14
14
A
528 538Right-handed alpha
Helix 15
15
A
564 575Right-handed alpha
Helix 16
16
A
586 598Right-handed alpha
Helix 17
17
A
606 621Right-handed alpha
Helix 18
18
A
629 631Right-handed 310
Helix 19
19
A
632 639Right-handed alpha
Helix 20
20
A
649 656Right-handed alpha
Helix 21
21
A
665 702Right-handed alpha
Helix 22
22
A
706 726Right-handed alpha
Helix 23
23
A
727 730Right-handed 310
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There are 4 sheets in PDB entry 4UMW. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 251first strand
Strand 2
A
238 243anti-parallel
Strand 3
A
260 263anti-parallel
Strand 4
A
313 317anti-parallel
Strand 5
A
273 275anti-parallel
Strand 6
A
301 302anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 297first strand
Strand 2
A
279 283anti-parallel
Strand 3
A
307 308anti-parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 418first strand
Strand 2
A
658 660anti-parallel
Strand 3
A
641 645parallel
Strand 4
A
623 627parallel
Strand 5
A
432 435parallel
Strand 6
A
578 582parallel
Strand 7
A
600 602parallel
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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 453first strand
Strand 2
A
550 561anti-parallel
Strand 3
A
541 547anti-parallel
Strand 4
A
513 519anti-parallel
Strand 5
A
505 510anti-parallel
Strand 6
A
496 501anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il