Analysis of interatomic Contacts of Structural Units in PDB entry:
4UQB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UQB entry

There is 1 chain in PDB entry 4UQB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -3VAL 386
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4UQB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 37Right-handed alpha
Helix 2
2
A
55 61Right-handed 310
Helix 3
3
A
62 72Right-handed alpha
Helix 4
4
A
84 86Right-handed 310
Helix 5
5
A
106 124Right-handed alpha
Helix 6
6
A
147 158Right-handed alpha
Helix 7
7
A
159 162Right-handed 310
Helix 8
8
A
175 178Right-handed 310
Helix 9
9
A
179 185Right-handed alpha
Helix 10
10
A
185 192Right-handed alpha
Helix 11
11
A
203 207Right-handed 310
Helix 12
12
A
209 216Right-handed alpha
Helix 13
13
A
242 256Right-handed alpha
Helix 14
14
A
280 291Right-handed alpha
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There are 3 sheets in PDB entry 4UQB. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 367first strand
Strand 2
A
348 355anti-parallel
Strand 3
A
381 386anti-parallel
Strand 4
A
323 329anti-parallel
Strand 5
A
310 316anti-parallel
Strand 6
A
298 302anti-parallel
Strand 7
A
-1 11anti-parallel
Strand 8
A
335 340parallel
Strand 9
A
372 377anti-parallel
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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 18first strand
Strand 2
A
260 265parallel
Strand 3
A
220 225parallel
Strand 4
A
194 198parallel
Strand 5
A
166 171parallel
Strand 6
A
130 132parallel
Strand 7
A
75 80parallel
Strand 8
A
47 52parallel
Strand 9
A
14 18parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 93first strand
Strand 2
A
96 102anti-parallel
Strand 3
A
144 145parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il