Analysis of interatomic Contacts of Structural Units in PDB entry:
4UQJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4UQJ entry

There are 4 chains in PDB entry 4UQJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 10	LYS 817
B	ASN 10	LYS 817
C	ASN 10	LYS 817
D	ASN 10	LYS 817

There are116 helices in PDB entry 4UQJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	22	36	Right-handed alpha
Helix 2	2	A	54	68	Right-handed alpha
Helix 3	3	A	81	92	Right-handed alpha
Helix 4	4	A	117	128	Right-handed alpha
Helix 5	5	A	139	142	Right-handed 310
Helix 6	6	A	143	156	Right-handed alpha
Helix 7	7	A	179	184	Right-handed alpha
Helix 8	8	A	197	212	Right-handed alpha
Helix 9	9	A	252	263	Right-handed alpha
Helix 10	10	A	279	301	Right-handed alpha
Helix 11	11	A	324	334	Right-handed alpha
Helix 12	12	A	411	415	Right-handed 310
Helix 13	13	A	416	419	Right-handed 310
Helix 14	14	A	423	437	Right-handed alpha
Helix 15	15	A	461	469	Right-handed alpha
Helix 16	16	A	482	487	Right-handed alpha
Helix 17	17	A	513	517	Right-handed 310
Helix 18	18	A	522	538	Right-handed alpha
Helix 19	19	A	539	543	Right-handed 310
Helix 20	20	A	568	580	Right-handed alpha
Helix 21	21	A	595	626	Right-handed alpha
Helix 22	22	A	636	642	Right-handed alpha
Helix 23	23	A	653	662	Right-handed alpha
Helix 24	24	A	664	677	Right-handed alpha
Helix 25	25	A	685	695	Right-handed alpha
Helix 26	26	A	706	714	Right-handed alpha
Helix 27	27	A	742	756	Right-handed alpha
Helix 28	28	A	757	768	Right-handed alpha
Helix 29	29	A	790	817	Right-handed alpha
Helix 30	30	B	22	36	Right-handed alpha
Helix 31	31	B	54	68	Right-handed alpha
Helix 32	32	B	81	92	Right-handed alpha
Helix 33	33	B	117	128	Right-handed alpha
Helix 34	34	B	139	142	Right-handed 310
Helix 35	35	B	143	156	Right-handed alpha
Helix 36	36	B	179	184	Right-handed alpha
Helix 37	37	B	197	212	Right-handed alpha
Helix 38	38	B	252	263	Right-handed alpha
Helix 39	39	B	279	301	Right-handed alpha
Helix 40	40	B	324	334	Right-handed alpha
Helix 41	41	B	411	415	Right-handed 310
Helix 42	42	B	416	419	Right-handed 310
Helix 43	43	B	423	437	Right-handed alpha
Helix 44	44	B	461	469	Right-handed alpha
Helix 45	45	B	482	487	Right-handed alpha
Helix 46	46	B	513	517	Right-handed 310
Helix 47	47	B	522	538	Right-handed alpha
Helix 48	48	B	539	543	Right-handed 310
Helix 49	49	B	568	580	Right-handed alpha
Helix 50	50	B	595	626	Right-handed alpha
Helix 51	51	B	636	642	Right-handed alpha
Helix 52	52	B	653	662	Right-handed alpha
Helix 53	53	B	664	677	Right-handed alpha
Helix 54	54	B	685	695	Right-handed alpha
Helix 55	55	B	706	714	Right-handed alpha
Helix 56	56	B	742	756	Right-handed alpha
Helix 57	57	B	757	768	Right-handed alpha
Helix 58	58	B	790	817	Right-handed alpha
Helix 59	59	C	22	36	Right-handed alpha
Helix 60	60	C	54	68	Right-handed alpha
Helix 61	61	C	81	92	Right-handed alpha
Helix 62	62	C	117	128	Right-handed alpha
Helix 63	63	C	139	142	Right-handed 310
Helix 64	64	C	143	156	Right-handed alpha
Helix 65	65	C	179	184	Right-handed alpha
Helix 66	66	C	197	212	Right-handed alpha
Helix 67	67	C	252	263	Right-handed alpha
Helix 68	68	C	279	301	Right-handed alpha
Helix 69	69	C	324	334	Right-handed alpha
Helix 70	70	C	411	415	Right-handed 310
Helix 71	71	C	416	419	Right-handed 310
Helix 72	72	C	423	437	Right-handed alpha
Helix 73	73	C	461	469	Right-handed alpha
Helix 74	74	C	482	487	Right-handed alpha
Helix 75	75	C	513	517	Right-handed 310
Helix 76	76	C	522	538	Right-handed alpha
Helix 77	77	C	539	543	Right-handed 310
Helix 78	78	C	568	580	Right-handed alpha
Helix 79	79	C	595	626	Right-handed alpha
Helix 80	80	C	636	642	Right-handed alpha
Helix 81	81	C	653	662	Right-handed alpha
Helix 82	82	C	664	677	Right-handed alpha
Helix 83	83	C	685	695	Right-handed alpha
Helix 84	84	C	706	714	Right-handed alpha
Helix 85	85	C	742	756	Right-handed alpha
Helix 86	86	C	757	768	Right-handed alpha
Helix 87	87	C	790	817	Right-handed alpha
Helix 88	88	D	22	36	Right-handed alpha
Helix 89	89	D	54	68	Right-handed alpha
Helix 90	90	D	81	92	Right-handed alpha
Helix 91	91	D	117	128	Right-handed alpha
Helix 92	92	D	139	142	Right-handed 310
Helix 93	93	D	143	156	Right-handed alpha
Helix 94	94	D	179	184	Right-handed alpha
Helix 95	95	D	197	212	Right-handed alpha
Helix 96	96	D	252	263	Right-handed alpha
Helix 97	97	D	279	301	Right-handed alpha
Helix 98	98	D	324	334	Right-handed alpha
Helix 99	99	D	411	415	Right-handed 310
Helix 100	100	D	416	419	Right-handed 310
Helix 101	101	D	423	437	Right-handed alpha
Helix 102	102	D	461	469	Right-handed alpha
Helix 103	103	D	482	487	Right-handed alpha
Helix 104	104	D	513	517	Right-handed 310
Helix 105	105	D	522	538	Right-handed alpha
Helix 106	106	D	539	543	Right-handed 310
Helix 107	107	D	568	580	Right-handed alpha
Helix 108	108	D	595	626	Right-handed alpha
Helix 109	109	D	636	642	Right-handed alpha
Helix 110	110	D	653	662	Right-handed alpha
Helix 111	111	D	664	677	Right-handed alpha
Helix 112	112	D	685	695	Right-handed alpha
Helix 113	113	D	706	714	Right-handed alpha
Helix 114	114	D	742	756	Right-handed alpha
Helix 115	115	D	757	768	Right-handed alpha
Helix 116	116	D	790	817	Right-handed alpha

There are 32 sheets in PDB entry 4UQJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, BA, BB, BC, BD, BE, BF, BG, BH, CA, CB, CC, CD, CE, CF, CG, CH, A, DB, C, DD, DE, DF, G, DH,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	50	first strand
Strand 2	A	11	19	parallel
Strand 3	A	72	75	parallel
Strand 4	A	95	98	parallel
Strand 5	A	110	112	parallel

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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	164	first strand
Strand 2	A	132	137	parallel
Strand 3	A	191	195	parallel
Strand 4	A	219	222	parallel
Strand 5	A	241	246	parallel
Strand 6	A	357	363	anti-parallel
Strand 7	A	368	375	anti-parallel
Strand 8	A	379	382	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	343	344	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	444	first strand
Strand 2	A	395	399	parallel
Strand 3	A	474	475	parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	408	first strand
Strand 2	A	421	422	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	489	491	first strand
Strand 2	A	735	737	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	496	498	first strand
Strand 2	A	730	732	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	646	648	first strand
Strand 2	A	700	705	parallel
Strand 3	A	500	504	anti-parallel
Strand 4	A	721	723	anti-parallel

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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	50	first strand
Strand 2	B	11	19	parallel
Strand 3	B	72	75	parallel
Strand 4	B	95	98	parallel
Strand 5	B	110	112	parallel

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There are 8 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	164	first strand
Strand 2	B	132	137	parallel
Strand 3	B	191	195	parallel
Strand 4	B	219	222	parallel
Strand 5	B	241	246	parallel
Strand 6	B	357	363	anti-parallel
Strand 7	B	368	375	anti-parallel
Strand 8	B	379	382	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	340	first strand
Strand 2	B	343	344	anti-parallel

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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	444	first strand
Strand 2	B	395	399	parallel
Strand 3	B	474	475	parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	421	422	anti-parallel

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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	491	first strand
Strand 2	B	735	737	anti-parallel

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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	496	498	first strand
Strand 2	B	730	732	anti-parallel

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There are 4 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	648	first strand
Strand 2	B	700	705	parallel
Strand 3	B	500	504	anti-parallel
Strand 4	B	721	723	anti-parallel

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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	50	first strand
Strand 2	C	11	19	parallel
Strand 3	C	72	75	parallel
Strand 4	C	95	98	parallel
Strand 5	C	110	112	parallel

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There are 8 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	164	first strand
Strand 2	C	132	137	parallel
Strand 3	C	191	195	parallel
Strand 4	C	219	222	parallel
Strand 5	C	241	246	parallel
Strand 6	C	357	363	anti-parallel
Strand 7	C	368	375	anti-parallel
Strand 8	C	379	382	anti-parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	340	first strand
Strand 2	C	343	344	anti-parallel

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There are 3 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	440	444	first strand
Strand 2	C	395	399	parallel
Strand 3	C	474	475	parallel

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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	408	first strand
Strand 2	C	421	422	anti-parallel

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There are 2 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	489	491	first strand
Strand 2	C	735	737	anti-parallel

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There are 2 strands in CG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	498	first strand
Strand 2	C	730	732	anti-parallel

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There are 4 strands in CH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	646	648	first strand
Strand 2	C	700	705	parallel
Strand 3	C	500	504	anti-parallel
Strand 4	C	721	723	anti-parallel

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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	50	first strand
Strand 2	D	11	19	parallel
Strand 3	D	72	75	parallel
Strand 4	D	95	98	parallel
Strand 5	D	110	112	parallel

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There are 8 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	164	first strand
Strand 2	D	132	137	parallel
Strand 3	D	191	195	parallel
Strand 4	D	219	222	parallel
Strand 5	D	241	246	parallel
Strand 6	D	357	363	anti-parallel
Strand 7	D	368	375	anti-parallel
Strand 8	D	379	382	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	340	first strand
Strand 2	D	343	344	anti-parallel

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There are 3 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	440	444	first strand
Strand 2	D	395	399	parallel
Strand 3	D	474	475	parallel

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There are 2 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	408	first strand
Strand 2	D	421	422	anti-parallel

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There are 2 strands in DF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	489	491	first strand
Strand 2	D	735	737	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	496	498	first strand
Strand 2	D	730	732	anti-parallel

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There are 4 strands in DH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	648	first strand
Strand 2	D	700	705	parallel
Strand 3	D	500	504	anti-parallel
Strand 4	D	721	723	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4UQJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
4UQJ