Analysis of interatomic Contacts of Structural Units in PDB entry:
4UX8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4UX8 entry

There are 6 chains in PDB entry 4UX8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 29	TYR 508
B	LEU 29	TYR 508
C	ASP 6	GLY 348
D	VAL 42	ILE 134
E	ASP 6	GLY 348
F	VAL 42	ILE 134

There are 52 helices in PDB entry 4UX8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	75	77	Right-handed 310
Helix 2	2	A	102	112	Right-handed alpha
Helix 3	3	A	156	160	Right-handed 310
Helix 4	4	A	161	167	Right-handed alpha
Helix 5	5	A	190	197	Right-handed alpha
Helix 6	6	A	306	311	Right-handed alpha
Helix 7	7	A	425	434	Right-handed alpha
Helix 8	8	B	75	77	Right-handed 310
Helix 9	9	B	102	112	Right-handed alpha
Helix 10	10	B	156	160	Right-handed 310
Helix 11	11	B	161	167	Right-handed alpha
Helix 12	12	B	190	197	Right-handed alpha
Helix 13	13	B	306	311	Right-handed alpha
Helix 14	14	B	425	434	Right-handed alpha
Helix 15	15	C	9	20	Right-handed alpha
Helix 16	16	C	20	34	Right-handed alpha
Helix 17	17	C	49	60	Right-handed alpha
Helix 18	18	C	76	89	Right-handed alpha
Helix 19	19	C	152	163	Right-handed alpha
Helix 20	20	C	164	179	Right-handed alpha
Helix 21	21	C	188	203	Right-handed alpha
Helix 22	22	C	204	213	Right-handed alpha
Helix 23	23	C	218	228	Right-handed alpha
Helix 24	24	C	230	235	Right-handed alpha
Helix 25	25	C	242	253	Right-handed alpha
Helix 26	26	C	253	267	Right-handed alpha
Helix 27	27	C	278	280	Right-handed 310
Helix 28	28	C	281	291	Right-handed alpha
Helix 29	29	C	318	320	Right-handed 310
Helix 30	30	C	321	334	Right-handed alpha
Helix 31	31	C	335	347	Right-handed alpha
Helix 32	32	D	51	54	Right-handed 310
Helix 33	33	D	77	89	Right-handed alpha
Helix 34	34	E	9	20	Right-handed alpha
Helix 35	35	E	20	34	Right-handed alpha
Helix 36	36	E	49	60	Right-handed alpha
Helix 37	37	E	76	89	Right-handed alpha
Helix 38	38	E	152	163	Right-handed alpha
Helix 39	39	E	164	179	Right-handed alpha
Helix 40	40	E	188	203	Right-handed alpha
Helix 41	41	E	204	213	Right-handed alpha
Helix 42	42	E	218	228	Right-handed alpha
Helix 43	43	E	230	235	Right-handed alpha
Helix 44	44	E	242	253	Right-handed alpha
Helix 45	45	E	253	267	Right-handed alpha
Helix 46	46	E	278	280	Right-handed 310
Helix 47	47	E	281	291	Right-handed alpha
Helix 48	48	E	318	320	Right-handed 310
Helix 49	49	E	321	334	Right-handed alpha
Helix 50	50	E	335	347	Right-handed alpha
Helix 51	51	F	51	54	Right-handed 310
Helix 52	52	F	77	89	Right-handed alpha

There are 32 sheets in PDB entry 4UX8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, CA, A, DB, C, EA, FA, FB, FC,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	31	first strand
Strand 2	A	55	56	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	41	first strand
Strand 2	A	142	150	parallel
Strand 3	A	120	126	anti-parallel
Strand 4	A	67	68	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	52	first strand
Strand 2	A	94	97	anti-parallel
Strand 3	A	86	88	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	73	first strand
Strand 2	A	79	82	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	177	first strand
Strand 2	A	252	263	parallel
Strand 3	A	236	245	anti-parallel
Strand 4	A	202	207	anti-parallel

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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	187	first strand
Strand 2	A	222	225	anti-parallel
Strand 3	A	214	215	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	271	first strand
Strand 2	A	299	300	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	277	first strand
Strand 2	A	369	372	parallel
Strand 3	A	354	357	anti-parallel
Strand 4	A	315	318	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	283	first strand
Strand 2	A	375	377	parallel

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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	295	first strand
Strand 2	A	339	342	anti-parallel
Strand 3	A	329	331	anti-parallel

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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	408	409	first strand
Strand 2	A	498	503	parallel
Strand 3	A	480	488	anti-parallel
Strand 4	A	439	443	anti-parallel

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There are 3 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	424	first strand
Strand 2	A	464	467	anti-parallel
Strand 3	A	455	456	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	31	first strand
Strand 2	B	55	56	anti-parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	41	first strand
Strand 2	B	142	150	parallel
Strand 3	B	120	126	anti-parallel
Strand 4	B	67	68	anti-parallel

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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	52	first strand
Strand 2	B	94	97	anti-parallel
Strand 3	B	86	88	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	73	first strand
Strand 2	B	79	82	anti-parallel

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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	177	first strand
Strand 2	B	252	263	parallel
Strand 3	B	236	245	anti-parallel
Strand 4	B	202	207	anti-parallel

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There are 3 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	187	first strand
Strand 2	B	222	225	anti-parallel
Strand 3	B	214	215	anti-parallel

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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	271	first strand
Strand 2	B	299	300	anti-parallel

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There are 4 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	277	first strand
Strand 2	B	369	372	parallel
Strand 3	B	354	357	anti-parallel
Strand 4	B	315	318	anti-parallel

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There are 2 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	282	first strand
Strand 2	B	375	376	parallel

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There are 3 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	295	first strand
Strand 2	B	339	342	anti-parallel
Strand 3	B	329	331	anti-parallel

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There are 4 strands in BK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	408	409	first strand
Strand 2	B	498	503	parallel
Strand 3	B	480	488	anti-parallel
Strand 4	B	439	443	anti-parallel

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There are 3 strands in BL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	420	424	first strand
Strand 2	B	464	467	anti-parallel
Strand 3	B	455	456	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	301	first strand
Strand 2	C	309	310	anti-parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	49	first strand
Strand 2	D	62	68	anti-parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	107	first strand
Strand 2	D	128	134	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	114	first strand
Strand 2	D	120	123	anti-parallel

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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	300	301	first strand
Strand 2	E	309	310	anti-parallel

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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	49	first strand
Strand 2	F	62	68	anti-parallel

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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	101	107	first strand
Strand 2	F	128	134	anti-parallel

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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	111	114	first strand
Strand 2	F	120	123	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4UX8

Analysis of interatomic Contacts of Structural Units in PDB entry:
4UX8