Analysis of interatomic Contacts of Structural Units in PDB entry:
4UXL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UXL entry

There is 1 chain in PDB entry 4UXL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ILE 1934ARG 2230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4UXL. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
1941 1943Right-handed 310
Helix 2
2
A
1987 2004Right-handed alpha
Helix 3
3
A
2033 2044Right-handed alpha
Helix 4
4
A
2052 2073Right-handed alpha
Helix 5
5
A
2081 2083Right-handed 310
Helix 6
6
A
2124 2128Right-handed 310
Helix 7
7
A
2129 2136Right-handed alpha
Helix 8
8
A
2139 2156Right-handed alpha
Helix 9
9
A
2166 2177Right-handed alpha
Helix 10
10
A
2187 2198Right-handed alpha
Helix 11
11
A
2201 2205Right-handed 310
Helix 12
12
A
2207 2228Right-handed alpha
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There are 3 sheets in PDB entry 4UXL. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1945 1952first strand
Strand 2
A
1959 1965anti-parallel
Strand 3
A
1974 1982anti-parallel
Strand 4
A
2022 2027anti-parallel
Strand 5
A
2012 2016anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2075 2076first strand
Strand 2
A
2107 2108anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2085 2087first strand
Strand 2
A
2098 2100anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il