Analysis of interatomic Contacts of Structural Units in PDB entry:
4V0T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4V0T entry

There are 2 chains in PDB entry 4V0T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 224
B
 MET 1LEU 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4V0T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 31Right-handed alpha
Helix 2
2
A
72 82Right-handed alpha
Helix 3
3
A
92 105Right-handed alpha
Helix 4
4
A
147 153Right-handed alpha
Helix 5
5
A
159 171Right-handed alpha
Helix 6
6
A
183 191Right-handed alpha
Helix 7
7
A
192 196Right-handed 310
Helix 8
8
A
197 216Right-handed alpha
Helix 9
9
B
23 31Right-handed alpha
Helix 10
10
B
72 82Right-handed alpha
Helix 11
11
B
92 105Right-handed alpha
Helix 12
12
B
147 153Right-handed alpha
Helix 13
13
B
159 173Right-handed alpha
Helix 14
14
B
183 191Right-handed alpha
Helix 15
15
B
197 216Right-handed alpha
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There are 2 sheets in PDB entry 4V0T. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 141first strand
Strand 2
A
107 112anti-parallel
Strand 3
A
126 132anti-parallel
Strand 4
A
38 41parallel
Strand 5
A
48 58anti-parallel
Strand 6
A
61 68anti-parallel
Strand 7
A
4 9anti-parallel
Strand 8
A
143 145anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 141first strand
Strand 2
B
107 112anti-parallel
Strand 3
B
126 132anti-parallel
Strand 4
B
38 41parallel
Strand 5
B
48 58anti-parallel
Strand 6
B
61 68anti-parallel
Strand 7
B
4 9anti-parallel
Strand 8
B
143 145anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il