Analysis of interatomic Contacts of Structural Units in PDB entry:
4WAF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WAF entry

There are 2 chains in PDB entry 4WAF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2THR 1061
B
 ASN 325MET 582
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 4WAF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 53Right-handed alpha
Helix 2
AA2
A
54 56Right-handed 310
Helix 3
AA3
A
58 62Right-handed 310
Helix 4
AA4
A
64 68Right-handed 310
Helix 5
AA5
A
88 92Right-handed 310
Helix 6
AA6
A
107 122Right-handed alpha
Helix 7
AA7
A
125 131Right-handed alpha
Helix 8
AA8
A
133 143Right-handed alpha
Helix 9
AA9
A
143 155Right-handed alpha
Helix 10
AB1
A
159 167Right-handed alpha
Helix 11
AB2
A
178 183Right-handed alpha
Helix 12
AB3
A
216 227Right-handed alpha
Helix 13
AB4
A
236 243Right-handed alpha
Helix 14
AB5
A
266 269Right-handed 310
Helix 15
AB6
A
270 280Right-handed alpha
Helix 16
AB7
A
290 295Right-handed alpha
Helix 17
AB8
A
305 310Right-handed alpha
Helix 18
AB9
A
328 330Right-handed 310
Helix 19
AC1
A
394 396Right-handed 310
Helix 20
AC2
A
488 500Right-handed alpha
Helix 21
AC3
A
525 537Right-handed alpha
Helix 22
AC4
A
544 554Right-handed alpha
Helix 23
AC5
A
557 563Right-handed 310
Helix 24
AC6
A
564 572Right-handed alpha
Helix 25
AC7
A
576 589Right-handed alpha
Helix 26
AC8
A
594 599Right-handed alpha
Helix 27
AC9
A
600 603Right-handed 310
Helix 28
AD1
A
608 623Right-handed alpha
Helix 29
AD2
A
624 638Right-handed alpha
Helix 30
AD3
A
639 642Right-handed 310
Helix 31
AD4
A
647 658Right-handed alpha
Helix 32
AD5
A
660 673Right-handed alpha
Helix 33
AD6
A
680 695Right-handed alpha
Helix 34
AD7
A
697 721Right-handed alpha
Helix 35
AD8
A
727 740Right-handed alpha
Helix 36
AD9
A
741 749Right-handed alpha
Helix 37
AE1
A
765 769Right-handed 310
Helix 38
AE2
A
789 793Right-handed 310
Helix 39
AE3
A
807 827Right-handed alpha
Helix 40
AE4
A
857 864Right-handed alpha
Helix 41
AE5
A
875 885Right-handed alpha
Helix 42
AE6
A
886 888Right-handed 310
Helix 43
AE7
A
889 912Right-handed alpha
Helix 44
AE8
A
957 965Right-handed alpha
Helix 45
AE9
A
974 994Right-handed alpha
Helix 46
AF1
A
994 1005Right-handed alpha
Helix 47
AF2
A
1015 1026Right-handed alpha
Helix 48
AF3
A
1031 1048Right-handed alpha
Helix 49
AF4
B
339 348Right-handed alpha
Helix 50
AF5
B
400 411Right-handed alpha
Helix 51
AF6
B
433 437Right-handed alpha
Helix 52
AF7
B
441 515Right-handed alpha
Helix 53
AF8
B
517 588Right-handed alpha
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There are 10 sheets in PDB entry 4WAF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 37first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
98 102parallel
Strand 4
A
69 73anti-parallel
Strand 5
A
79 82anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 212first strand
Strand 2
A
189 198anti-parallel
Strand 3
A
284 289parallel
Strand 4
A
250 254anti-parallel
Strand 5
A
260 261anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 326first strand
Strand 2
A
483 485parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 392first strand
Strand 2
A
333 341anti-parallel
Strand 3
A
472 477anti-parallel
Strand 4
A
439 444anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
353 362anti-parallel
Strand 3
A
371 372anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
353 362anti-parallel
Strand 3
A
401 413anti-parallel
Strand 4
A
416 428anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
751 752first strand
Strand 2
A
760 761anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
770 771first strand
Strand 2
A
779 784anti-parallel
Strand 3
A
796 803anti-parallel
Strand 4
A
845 849anti-parallel
Strand 5
A
838 842anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
854 856first strand
Strand 2
A
921 924anti-parallel
Strand 3
A
929 931anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
334 336first strand
Strand 2
B
355 359parallel
Strand 3
B
368 374anti-parallel
Strand 4
B
377 383anti-parallel
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