Analysis of interatomic Contacts of Structural Units in PDB entry:
4WVB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WVB entry

There are 2 chains in PDB entry 4WVB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 3ARG 420
B
 ALA 2ARG 420
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 4WVB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 15Right-handed alpha
Helix 2
AA2
A
33 44Right-handed alpha
Helix 3
AA3
A
47 63Right-handed alpha
Helix 4
AA4
A
106 118Right-handed alpha
Helix 5
AA5
A
120 147Right-handed alpha
Helix 6
AA6
A
158 163Right-handed 310
Helix 7
AA7
A
167 169Right-handed 310
Helix 8
AA8
A
170 176Right-handed alpha
Helix 9
AA9
A
203 217Right-handed alpha
Helix 10
AB1
A
220 228Right-handed alpha
Helix 11
AB2
A
234 255Right-handed alpha
Helix 12
AB3
A
259 276Right-handed alpha
Helix 13
AB4
A
299 303Right-handed 310
Helix 14
AB5
A
304 309Right-handed alpha
Helix 15
AB6
A
312 328Right-handed alpha
Helix 16
AB7
A
355 369Right-handed alpha
Helix 17
AB8
A
371 390Right-handed alpha
Helix 18
AB9
A
408 419Right-handed alpha
Helix 19
AC1
B
3 16Right-handed alpha
Helix 20
AC2
B
33 44Right-handed alpha
Helix 21
AC3
B
47 63Right-handed alpha
Helix 22
AC4
B
106 118Right-handed alpha
Helix 23
AC5
B
120 147Right-handed alpha
Helix 24
AC6
B
158 163Right-handed 310
Helix 25
AC7
B
167 169Right-handed 310
Helix 26
AC8
B
170 176Right-handed alpha
Helix 27
AC9
B
194 198Right-handed 310
Helix 28
AD1
B
200 217Right-handed alpha
Helix 29
AD2
B
220 228Right-handed alpha
Helix 30
AD3
B
234 255Right-handed alpha
Helix 31
AD4
B
259 276Right-handed alpha
Helix 32
AD5
B
299 303Right-handed 310
Helix 33
AD6
B
304 309Right-handed alpha
Helix 34
AD7
B
312 328Right-handed alpha
Helix 35
AD8
B
355 369Right-handed alpha
Helix 36
AD9
B
371 390Right-handed alpha
Helix 37
AE1
B
408 419Right-handed alpha
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There are 9 sheets in PDB entry 4WVB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
72 74anti-parallel
Strand 3
A
97 98anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
B
93 95anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
A
287 288anti-parallel
Strand 3
A
293 294anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 278first strand
Strand 2
A
283 284anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 395first strand
Strand 2
A
402 406anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 32first strand
Strand 2
B
72 74anti-parallel
Strand 3
B
97 98anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 233first strand
Strand 2
B
287 288anti-parallel
Strand 3
B
293 294anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 278first strand
Strand 2
B
283 284anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
392 395first strand
Strand 2
B
402 406anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il